Desulfovibrio piger: DESPIGER_0339
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Entry
DESPIGER_0339 CDS
T04638
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dpg
Desulfovibrio piger
Pathway
dpg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dpg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DESPIGER_0339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpg03400
]
DESPIGER_0339
Enzymes [BR:
dpg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DESPIGER_0339
DNA repair and recombination proteins [BR:
dpg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DESPIGER_0339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
AAA_16
AAA_30
Motif
Other DBs
NCBI-ProteinID:
SFV72231
UniProt:
A0A1K1LC17
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All DBs
Position
I:339365..342823
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AA seq
1152 aa
AA seq
DB search
MADILSLLSGPAEARHWQRSGMASCCRLACAALARGRSSVILVRDREEYTAARALLTLFS
PSLSLADMAPDVPAWQLPFAALPAGLLLRRDRDSWARRLAALYSLAQGGPRCLILSTEAL
LLRHVPRDFFAGHTLDLARGSDYPPELILDQAVEWGYERVPLVTRPGQMARRGDIFDIFP
AGYPRPVRMEFFGDTLEELRLFDAESQRSLQGLGEMTLLPALPFVLDAQGLAAARGRMDA
LFAGARISENDCYTFKKTLDAGGLGLLPGVVHEKASTIADWLPEDPLWFLPGQADCDAAL
HGTAMQLRDQLEEDDAPLPQPSALCLCGSLQELPWAGARHFYLEPLVMGVDATGDDVQER
PLHAFTDLFPIPGAADRPWQHLAAGLKEWQNRRRQVVLSFSSQRSRAKFLKLAEQEGITP
ALRYAPEQRGLFALVSPWRSGAELVWDDVLVLGEDILYPRAEKKARVSSRAFKGLDSFDD
LKAGDLLVHRDYGIGRFAGLHHLVQGGQGNDFLLVEYSGQDRLYVPVDRLGLIQRFKGGE
GAEPPLDRLGGASWSSGKEKVRKAIEKIAADLVEMYAYRKVAKGFRYDPPGELYHEFEAT
FGFEETPDQARAIEDVLADMDKPEPMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALLC
PTTVLAEQHYQTFRARLAGFPVTVGLLSRFVPRARQKEVLKAAAEGQIDILLGTHRLLSS
DVSLPNLSLLILDEEQRFGVRHKEKLKALKKNVDVLTLTATPIPRTLQLSMSGIRDLSVI
ETAPQDRKPVATAVLRRDDATLRTVLERELAREGQVFWVYNRVQGLERVAEYVRKLVPAA
RVGMAHGQMSESELESNMHKFWHGELDVLVCTAIVESGLDFPRANTLVVDQAQLFGLGQL
YQLRGRVGRSDRQAYAFFVVPDTEHLSEVAGERLRIIMDMDYLGAGFQVAMEDLRLRGAG
NILGEVQSGHMGRVGLDLYLEMLEEAVARLKGTPVTQDVETELNLGLPAHIPQSYIEDGR
ERLRCYKALTSATSGAAREEVALSMRDRFGSFPQELANFIAVLDFKQFLSRLQVRRADIY
LDHVRLVWGDGQTAVQPERILQLVASMKGARMLPPAALMLPLPPDKDFAQGLRGLRQALE
GIRVPEAQGGPA
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atggcagatatcctttccctgctttcagggccggccgaggcccgacactggcagcgcagc
ggcatggcgtcctgttgccgtcttgcctgcgccgcgctggcccggggacgcagcagcgtc
atcctggtgcgcgaccgtgaggagtacacggcggcgcgcgcactgctgacccttttctcc
ccctcgctttccctggcggacatggcccctgatgtccccgcctggcaactgccctttgcc
gcgctccccgccggccttctgctgcgccgtgaccgggattcctgggcacgacggctggcg
gccctgtacagccttgcccagggcgggccccgctgcctcatcctgagcacggaagcgctg
ctgctgcgccatgtgccgcgcgacttttttgccgggcatacgctcgacctggcacggggc
agcgactaccccccggaactgatcctcgatcaggccgtggaatggggctacgagcgtgtc
cccctggtcacccggccggggcagatggcccggcgcggcgacatcttcgacatcttcccg
gccggctatccgcgtcctgtacgcatggaatttttcggcgacacgctggaagagctgcgc
ctgttcgatgccgagagccagcgctccctgcagggcctgggcgagatgaccctgctgccg
gccctgcctttcgtgctggacgcgcagggcctggccgcggcccgcggacgcatggatgcc
ctgttcgccggggcgcgcatcagcgagaacgactgctataccttcaagaagaccctggat
gccggcggtctgggcctgctgccgggcgtggtgcacgaaaaggccagcaccatagccgac
tggctgccggaggatccgctctggttcctgcccggacaggctgactgtgacgccgccctt
cacgggacggccatgcagctgcgcgaccagctggaagaggacgatgcgcccttgccgcag
ccgtccgccctgtgcctgtgcggcagcctgcaggagctgccctgggcaggggcccgccat
ttctatctggagcctctggtcatgggcgtggatgccacgggtgacgacgtgcaggagcgc
ccgctccatgccttcacggatcttttccccattcccggggcggccgaccggccgtggcag
catctggctgccggtctgaaggaatggcagaaccggcgccgccaggtggtgctgagcttt
tcctcgcagcgcagccgggccaaattcctcaagctggccgagcaggaaggcatcacgcct
gccttgcgctatgcgccggagcagcgcggactgttcgccctggtctccccctggcgttcc
ggtgcggagctggtctgggatgatgtgctcgtgctgggcgaggacatcctctatccgcgt
gcggaaaaaaaggcccgtgtctcctcgcgtgccttcaaggggctggacagcttcgacgac
ctcaaggccggggatctgctcgtccaccgggattacggcatcggccgtttcgccggtctg
caccacctggtgcagggaggacagggcaatgacttcctgctggtggagtactccgggcag
gacaggctctatgtgccggtggaccgtctggggctcatccagcgtttcaagggcggcgag
ggcgcggaaccgccactggaccgcctgggcggcgccagctggagttccggcaaggaaaag
gtccgcaaggccatcgaaaagatcgcggccgatctggtggagatgtacgcctaccgcaag
gtggccaaggggttccgctacgatccgccgggcgagctgtaccatgaattcgaagcgacc
ttcggctttgaggagaccccggaccaggcacgggccatcgaggacgtgctggccgacatg
gacaagcccgagcccatggaccgcctggtctgcggcgacgtgggcttcggcaagaccgaa
gtggccctgcgggcggctttccgtgcggccagcgagggacgccaggtggccctgctgtgc
cccaccacggtgctggccgagcagcattaccagaccttccgggcccgtctggccggtttt
cctgtcacggtgggcctgctgagccgcttcgtgccccgcgcccggcaaaaggaagtcctc
aaggcagcggccgaggggcagatcgacatcctgctgggcacgcaccgcctgctgtcgtcg
gatgtctccctgcccaatctttccctgctcatcctggatgaggagcagcgcttcggcgtg
cggcacaaggaaaagctcaaggccctgaaaaagaatgtggacgtgctgaccctgacggcc
acgcccatcccgcgcaccctgcagctctccatgtccggcatccgcgacctttccgtcatc
gagaccgccccgcaggaccgcaagcctgtggccacggccgtgctgcggcgtgacgacgcc
accctgcgcacggtcctggaacgcgagctggcccgggaaggccaggtcttctgggtctac
aaccgggtgcagggcctggagcgcgtggccgagtatgtgcgcaagctggtgcccgccgcc
cgggtgggcatggcgcacggccagatgtcggaaagcgagctggaaagcaacatgcacaag
ttctggcacggcgagctggatgtgctggtctgtacggccatcgtcgagtcggggctggat
tttccccgtgccaataccctggtggtggatcaggcccagctgttcggccttggccagctc
tatcagctgcggggccgggtgggccgcagcgaccgtcaggcctacgccttcttcgtggtg
cccgataccgaacacctgagcgaggtggccggggagcggctgcgcatcatcatggacatg
gactacctgggcgccggtttccaggtggccatggaagacttgcgcctgcgcggcgcgggc
aacatcctgggcgaggtgcagtccggccatatgggccgggtggggctcgacctgtacctg
gagatgctggaagaggccgtggcccgcctcaagggcacgcccgtcacccaggatgtggag
acggagctcaatctcggcctgcctgcccacatcccccagtcctacatcgaggacggccgg
gagcgcctgcgctgctacaaggcgctcacgtcggccaccagcggtgcggcccgtgaggaa
gtggccctttccatgcgcgaccgtttcggcagtttcccgcaggagctggccaatttcatc
gccgtgctcgatttcaagcaattcctgagccggctgcaggtccggcgtgcggacatctat
ctggatcatgtccggctggtgtggggcgacgggcagaccgccgtgcagccggagcgcatc
ctgcagctggtggcttccatgaagggggcccggatgctgcccccggcggcgctcatgctg
cccctgccgccggacaaggattttgcccaggggctgcgggggctgcgccaggccctggaa
ggcatccgcgtaccggaggcccagggcggcccggcctag
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