Desulfovibrio piger: DESPIGER_0610
Help
Entry
DESPIGER_0610 CDS
T04638
Name
(GenBank) Exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
dpg
Desulfovibrio piger
Brite
KEGG Orthology (KO) [BR:
dpg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpg03400
]
DESPIGER_0610
DNA repair and recombination proteins [BR:
dpg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DESPIGER_0610
Archaeal homologous recombinant proteins
DESPIGER_0610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
ABC_tran
cobW
NTPase_1
nSTAND3
AAA_22
AAA_15
Apc13p
Motif
Other DBs
NCBI-ProteinID:
SFV72494
UniProt:
A0A1K1LGA8
LinkDB
All DBs
Position
I:620714..624406
Genome browser
AA seq
1230 aa
AA seq
DB search
MRIQNIRFQNLNSLTGIWEIDLTRPDFVSAGIFAITGPTGAGKTTILDAICLALYGRTPR
LKTLSDSENEIMSRQTGECMAEVVFQIASGRRYRCHWSQRRARKSPEGRLQAARHEIADA
DSGQIICAQKRDMARVVTEITGLDFDRFTRSMMLAQGGFSAFLDASADSRAPILESITGT
EKYSRISMLVHERHRQEKLLLEDMRKELAGKPLLAADEEQALRQQLSRLEEQGRLLKTQA
QQMQQAVQWLRGLDTARSQLARIEAEEEKLSLREQAFRPQALRLEQAQRAARLEGSYAAL
LQLRHQQSLLTEQRQNHATELPRLQEKLQEARHKQEACARQLEEAKAEQARQTPLLHQVR
ALDIQLESSEKEVRRVLLDVRQQEQALASLQARRDSRRQALDDILRQQAAVKSWLDSHAA
DAGLMEQLSGIKAGIQRVHDLEQKQRQRDMALRQASQQLEKDNARLAERLRRQEVAATEL
SQLESRRRNLLAEKEKLLEGRSLLQWQEEYSDIQKKILLLQAIEKSLNDVFLYHTELQRW
RQQLQQWQEQHQQNKTLLEQQQALRDALEVSLASLERERMLALRIASLEQHRAALEEGHA
CPLCGSLEHPYLLQGLPTSDSWQQIEDVRQRFTVTDQQCAALRERLTGLEQSLLVGMENA
RSLQDKLQKSQEYLAQLAEKAGLPSLLRESLESATNFVREQQKRLAELLRELYQRISTAD
KLEKTCQMLDDNLPRLQEQKAMLDQAVEQLRHELDMATAEQQRVRQEVEQLRQEGQQGRQ
ALDTMLAAYDLGTADAELLSIVSALKTRRAEWERQTAALSHLAASRQELELAAGQHDQEV
RSQQAHLEAQQREAREREEQWKKLHEQRLALFAKKDVQEVEAGLARAVTQGEQRLADQTA
VAGRMSDVVTMTESAIREKDALLAGIAGQTEHAGQAFAQGLQQEAFADERSFLQACLPAD
ERGELERLSQELHEARMELSGRSRAAREHLATETARALTTKNQEELEQALAALDQQQAAQ
QQEQGACLQRLADNERLHQEQRVLVERMEQQERVFEQWSALQELIGSADGKKFRNIVQQM
NLELMVAHANGQLVKMTDRYMLEVGSGPLELNIRDNYQAGELRSTKNLSGGESFLVSLAL
ALGLSQMASRTTRIDSLFLDEGFGTLDEDALDTALSTLASLQQRGKLIGIISHVQSLKER
VPTQIEVLPIGGGRSRILGPGCRHKSECDN
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatccagaacatacgtttccagaatctcaattccctgaccggcatctgggagatc
gacctgacccggccagacttcgtctccgccgggatctttgccatcacaggccccacgggg
gccggcaagacgaccatcctggacgccatctgcctggccctgtacggccggacgccgcgg
ctcaagaccctgagcgacagcgagaacgagatcatgtcccgtcagaccggcgagtgtatg
gcggaggtggtcttccagatcgcctccgggcgccgttaccgctgccactggagccagcgc
cgggcccggaaatccccggaaggcaggctccaggcggcccggcacgagatagcggacgcg
gacagcggccagatcatctgtgcccagaaaagggatatggccagggtggtcaccgagata
accgggctggattttgaccgcttcacccgctccatgatgctggcccagggaggtttctcg
gcctttctggatgcttcggccgatagccgggcccccatacttgagagcatcaccggcacg
gagaagtacagccgcatctccatgctggtacatgaacggcaccggcaggaaaaactcctg
ctggaggacatgcgcaaggagctggccggcaagcccctgctggccgcggacgaggagcag
gccttgcggcagcagctgtcccggctggaagagcagggccggctgctcaagacacaggcg
cagcagatgcagcaggccgtgcagtggctgcgggggcttgatacggcccggagccagctg
gcccggatagaagcggaggaggaaaaactttccctcagggagcaggcgttccgcccgcag
gctctgcggctggaacaggcacagcgggctgcccgcctggaaggcagttatgctgctttg
ctgcaattgcgtcatcagcaaagcctgctgacggaacagcggcagaaccatgccacggag
ctgccccgcttgcaggagaaattgcaggaagcccggcataaacaggaagcgtgtgcccgt
cagctcgaagaggccaaagcggagcaggcacgccagacgccgttgctgcatcaggtacgg
gccctcgacatccagctggaaagctcggaaaaggaggtgcgtcgtgtcctgctggatgtt
cgccagcaggaacaggcccttgcctcgttacaggcccgccgcgacagtcggcggcaggcg
ctcgatgatatcctccggcagcaggccgccgtgaaaagctggctggacagccatgcggca
gacgccgggctgatggagcagttgagcggcatcaaggccggtatccagcgggtgcacgat
cttgagcagaagcagcggcaacgggacatggccctgcgacaggccagccagcagctggag
aaggacaacgcacggctggctgaacgtctccggcgtcaggaagtcgccgccaccgaactc
tctcagctggaaagcagacgccggaacttgctggcggaaaaagaaaaacttctggaggga
cgttccctgctccagtggcaggaagaatatagcgacatccagaaaaagatcctgctgtta
caggccattgaaaaatctctgaatgatgtttttctttaccataccgagttacagcgctgg
cggcagcaattgcagcagtggcaggaacagcatcagcaaaacaaaacacttctggaacag
cagcaggctttgcgggatgcgctggaagtctcgctggcaagtctggagcgggaacgcatg
ctggccctgcgcatcgccagcctggagcagcatcgggctgcgctcgaggaaggacatgcc
tgtcccctgtgcggctcactggagcatccttacctgctgcaggggctgccgacttccgac
agctggcagcagatagaagatgtccgtcagcgcttcacggtgacggatcagcagtgtgcc
gccttgagggagcgattgacaggtctggaacaaagcctgctcgtcggcatggagaatgcc
cggtcgcttcaagacaagctgcagaaatcccaggaatatctggcacaactggcagagaag
gccgggctgccttccctgctgcgggaatccctggaaagtgccacgaacttcgtgcgggaa
cagcagaaaaggttggccgaacttctgcgggagctctatcagcggatatccacggcagac
aagcttgaaaagacctgccagatgctggatgacaatctcccccgcctgcaggaacaaaag
gcgatgctggatcaggccgtcgagcagctcaggcatgagctggacatggccactgccgag
cagcagcgggtacgtcaggaagtggagcaactgcgacaggaaggacagcaggggagacag
gccctcgacacgatgctggctgcctatgatctcggcaccgccgatgctgaacttttgtcc
atagtgtctgccttgaagacccgccgtgcggaatgggaacgtcagacggcggccctttca
cacctggccgcttcccggcaggaacttgagctggcggcagggcagcatgatcaggaagtg
agatcgcagcaggcacacctggaggcgcagcagcgggaagcccgggaacgggaagagcaa
tggaaaaagctgcacgaacagcgtctggccctgtttgccaaaaaagatgtccaggaagtc
gaggccgggctggcccgggcagtgacacaaggtgagcagcgacttgccgaccagaccgcc
gtggccggcaggatgtcggatgtggtcaccatgacagaatccgccatcagagaaaaagat
gccttgctggccggtatcgccggccagacagagcacgccgggcaggccttcgcgcaaggc
ctgcagcaggaagcctttgccgacgaacggagttttttgcaagcctgcctgcctgcggac
gaaaggggagaactggagcggctttcacaggaactgcacgaagcccgcatggagctgtcg
gggcggagcagagcggccagggagcatctggccaccgagactgccagggccctgacgaca
aagaaccaggaagaactggaacaggcactggctgcgctggatcagcagcaggcagcacag
caacaggaacagggagcatgcctgcaacggctggcggacaatgagcgtttgcatcaggaa
cagcgcgtactggtagagcgcatggaacagcaggaacgcgtgttcgagcaatggtccgcg
ttgcaggaactgatagggtccgctgacgggaaaaaattccgtaacatcgtccagcagatg
aaccttgagttgatggtcgcccatgccaatgggcagctggtcaaaatgactgaccgctat
atgctggaggtgggcagcgggccgttggagctcaatatccgtgataactaccaggccgga
gagctgcgcagcacaaaaaacctctctggaggcgaaagctttcttgtcagcctggccctg
gccctggggctctcccagatggccagccgtactaccaggatcgattccctcttccttgat
gaaggtttcggtacgctggatgaagatgcgctggacacagcgctgagtaccttggccagc
ctgcagcagcgggggaaactgatcggtatcatctcccacgtacagagtttgaaggaacga
gtgccaactcagatagaggtgcttcccatcggtggcggcaggagccgcatccttggtccc
gggtgccgccataaaagcgaatgcgacaattga
DBGET
integrated database retrieval system
