Desulfovibrio piger: DESPIGER_1100
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Entry
DESPIGER_1100 CDS
T04638
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dpg
Desulfovibrio piger
Pathway
dpg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dpg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DESPIGER_1100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpg03021
]
DESPIGER_1100
03400 DNA repair and recombination proteins [BR:
dpg03400
]
DESPIGER_1100
Enzymes [BR:
dpg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DESPIGER_1100
Transcription machinery [BR:
dpg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DESPIGER_1100
DNA repair and recombination proteins [BR:
dpg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DESPIGER_1100
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Hydin_ADK
Motif
Other DBs
NCBI-ProteinID:
SFV72959
UniProt:
A0A1K1LE35
LinkDB
All DBs
Position
I:1172082..1176218
Genome browser
AA seq
1378 aa
AA seq
DB search
MGQLTKQFGKINVTLPIPHLLNLQIDSYSKFLQEGVAEADRNKEEGLEGVFHTVFPIEDF
NKTASLEFVSYEIREPKYDQAECISKGLTYEAPVHIKVRLVVYDTDEATGNRTIRDIKEQ
GIYFGTLPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDGGKTHTSRKVLYSCRVIPMR
GSWLDFDFDHKDILYVRIDRRRKMPATILFKAMGMSKMDILEYFYTREHYLLKPHNTLMW
EVEKSLYRKDNAYSDIVTEDGTVLIKAGKPITKRGWRQVCEAGIKAIEVRPDTLDGMFLA
EDVIAPGSGEVLAEAADEITPGLLERMREAGIERIAVLHTKGTDTSSSIRDTLMQDRIPD
QEKAQEEIYRRLRPSSPPTAEIAASFFDNLFRSPDYYDLSPVGRYKLNQRLGLPDTEDSR
TLTDNDILTAIKVLVQLKDSHGPADDIDHLGNRRVRLVGELVENQYRIGLVRMERAIKER
MSIQEISTLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNSLSEVTHKRRLSALGPGGL
TRERAGFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTFAKVNDFGFIETPYRVVRNGR
MTDEIVHLDASREGDQVVAQANARVDADGNFLDEFVTVRVKGEVEMRSRDEVTLMDISPS
QMVSISAALIPFLEHDDANRALMGSNMQRQAVPLLRSEKPLVGTGMEIDVARDSGACIVA
QADGKVEYADADRIVVSYEGDLYKKQGGVRAYDLLKFHKSNQNSCFGQKPTCYPGQVFKK
GEILADGPGIDEGQLALGKNLVVAFMPWCGYNYEDSILISERTVKEDIFTSIHIEEFEVV
ARDTKLGPEEITRDIPNVSEDMLRNLDDSGIIRIGAAVKPDDILVGKITPKGETQLTPEE
KLLRAIFGEKARDVKNTSLKVPPGVEGTVIDVKVFNRRSGEKDDRTLAIEAHDTAVLDQK
EADHMRALGNRTRQVLAPHVLGKLTAVSVPGSKKGEVLVEAGAALTREQLDAIPVKKLQG
LFESKEVNDIVADQLRDYDHQVDYLHAIYDSKREKVTEGDDLPPGVIKMVKVHIAIKRKL
SVGDKMAGRHGNKGVVSCILPEEDMPFFADGRPVDIVLNPLGVPSRMNIGQIMETHLGWG
AKELGRQLAELLDSGAALQVVRDEVKDVFDSPAISELVDKMDDEEFIASVKKLRNGIVTK
TPVFDGATEEEIWGWMEKAGKDSDGKTILYDGRTGVPFKNRVTTGVMYILKLHHLVDEKI
HARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYLLQEFLTVKSDDVTGRVK
MYEKIVKGDNFLEAGLPESFNVLVKELMSLGLDVTLHQEDGKKKPKRIGFMRDQEPEE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgggccagcttaccaaacagttcggcaaaatcaacgttactctccccattccgcacctc
ctcaatcttcagatcgactcctacagcaagttcctgcaggaaggcgttgccgaagccgat
cggaacaaggaggaaggtctggaaggcgtgttccacaccgtcttccccatcgaagatttc
aacaagaccgccagcctggaattcgtcagctacgaaatccgcgagcccaagtacgaccag
gccgagtgcatctccaagggcctgacctacgaggccccggtgcacatcaaggtgcgcctg
gtggtctatgacaccgatgaagccacgggcaaccgcaccatccgcgacatcaaggaacag
ggcatctacttcggcaccctgcccctgatgacggaaaagggcacgttcatcatcaacggc
accgagcgcgtcatcgtcaaccagctgcagcgttctcccggcatcatctttgaacacgac
ggcggcaagacccacaccagccgcaaggtgctctattcctgccgagtcatccccatgcgt
ggctcctggctggacttcgacttcgaccacaaggacatcctgtatgtccgcatcgaccgt
cgccgcaagatgcccgccaccatcctgttcaaggccatgggcatgagcaagatggacatc
ctggagtacttctacacccgcgagcactacctgctgaagccgcacaacaccctgatgtgg
gaagtggaaaagtccctgtaccgcaaggacaacgcctactccgacatcgtcaccgaagac
ggcaccgtgctcatcaaggccggcaagcccatcaccaagcgcggctggcgccaggtgtgt
gaagcgggcatcaaggccatcgaagtgcgtcccgacaccctggacggcatgttcctggcc
gaagacgtcatcgcccccggcagcggcgaagtgctggccgaagccgccgacgagatcacg
cccggcctgctggagcgcatgcgcgaagccggcatcgagcgcatcgccgtgctgcacacc
aagggcaccgacacctcttcctccatccgcgacaccctgatgcaggaccgcatccccgat
caggaaaaggcacaggaagagatctaccgtcgtctgcgtccttccagcccgcccaccgcc
gagatcgccgccagcttcttcgacaacctgttccgcagcccggactactatgacctgtcg
ccggtgggccggtacaagctcaaccagcgcctgggcctgcccgacaccgaagattcccgt
accctgaccgacaacgacatcctcaccgccatcaaggtgctggtgcagttgaaggacagc
cacggcccggccgacgatatcgaccatctgggcaaccgccgcgtgcgtctggtgggcgaa
ctggtggaaaaccagtaccgcatcggtctggtgcgcatggagcgcgccatcaaggaacgc
atgagcatccaggagatctccacgctcatgccccacgacctgatcaatcccaagcctgtg
gccgcggtgctcaaggaattcttcggcacctcccagctgtcgcagttcatggaccagacc
aactccctgtccgaagtgacccacaagcgccgtctgtcggccctgggccccggcggtctg
acccgtgagcgcgccggcttcgaagtgcgcgacgtgcacacctcccactatggccgcatc
tgccccatcgaaacgcccgaaggtcccaacatcggtctgatcgtgtcgctgaccaccttc
gccaaggtcaacgacttcggtttcatcgagaccccgtaccgcgtggtgcgcaatggccgc
atgaccgacgagatcgtgcatctggacgcctcccgcgaaggcgaccaggtggtggcccag
gccaacgcccgcgtggacgccgacggcaacttcctggacgagttcgtgaccgtgcgcgtc
aagggcgaagtggaaatgcgctcccgtgacgaggtgaccctcatggacatctcgcccagc
cagatggtctccatctcggccgcgctcatccccttcctggaacacgacgacgccaaccgc
gccctcatgggttccaacatgcagcgccaggccgtgccgctgctgcgcagcgaaaagccc
ctggtgggcaccggcatggaaatcgacgtggcccgcgactccggcgcctgcatcgtggcc
caggccgacggcaaggtggaatacgccgacgccgaccgcatcgtggtctcctacgaaggc
gacctgtacaagaaacagggcggcgtgcgtgcctatgacctgctgaagttccacaagtcc
aaccagaactcctgcttcggccagaagcccacctgctaccccggccaggtgttcaagaag
ggcgagatcctcgccgacggtcccggcatcgacgaaggccagctggccctgggcaagaac
ctggtggtggccttcatgccctggtgcggctacaactacgaagactccatcctcatttcc
gaacgtaccgtgaaagaggacatcttcacctccatccacatcgaagaattcgaagtggtg
gcccgcgacaccaagctcggacccgaagagatcacccgcgacatccccaacgtcagcgaa
gacatgctgcgcaacctggacgacagcggcatcatccgcatcggcgcggccgtgaagccc
gacgacatcctggtcggcaagatcacccccaagggcgagacccagctgaccccggaagaa
aagctgttgcgcgccatcttcggcgagaaggcccgcgacgtgaagaacacctccctcaag
gtgcccccgggagtggaaggcacggtcatcgacgtcaaggtgttcaaccgccgctccggt
gagaaggacgaccgcaccctggccatcgaggcccacgacaccgccgtgctggaccagaag
gaagccgaccacatgcgcgccctgggcaaccgcacccgccaggtgctggccccccatgtg
ctgggcaagctgaccgccgtcagcgtccccggcagcaagaagggcgaagtgctggtggaa
gccggtgccgccctgacccgcgagcagctggacgccatcccggtgaagaagctgcagggc
ctgttcgagagcaaggaagtcaacgacatcgtggccgaccagctcagggactacgaccat
caggtggattacctgcacgccatctatgactccaagcgcgagaaggtcaccgaaggggac
gacctgcctcccggcgtcatcaagatggtcaaggtccacatcgccatcaagcgcaagctc
tcggtgggcgacaagatggccggccgtcacggcaacaagggtgtggtctcctgcatcctg
cccgaagaagacatgcccttcttcgccgacggtcgccccgtggacatcgtgctcaacccc
ctgggcgtgccttcgcgtatgaacatcggccagatcatggagacccacctgggctggggc
gccaaggaacttggccgccagctggccgaactgctggattccggcgcggccctgcaggtg
gtgcgtgacgaggtcaaggacgtcttcgactccccggccatcagcgagctggtggacaag
atggacgacgaggagttcatcgcctcggtcaagaagctgcgcaacggcatcgtgaccaag
accccggtcttcgacggcgccaccgaagaagagatctggggctggatggaaaaggccggc
aaggacagcgacggtaagaccatcctgtacgacggccgcaccggcgtgcccttcaagaac
cgcgtgaccaccggtgtcatgtacatcctgaagctgcaccacctggtcgacgaaaagatc
cacgcccgttccaccggcccctacagcctggtcacccagcagccgctgggcggcaaggcg
cagttcggtggccagcgtctgggcgaaatggaagtctgggctctggaagcctacggcgcc
gcctatctcctgcaggaattcctcaccgtcaagtccgacgacgtgaccggacgtgtgaag
atgtacgagaagatcgtcaagggcgacaacttcctggaagccggtctgcccgaatccttc
aacgttctggtcaaggaactcatgagcctgggcctcgacgtgaccctgcatcaggaagac
ggcaagaaaaagcccaagcgtatcggcttcatgcgcgaccaggaacccgaggaatag
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integrated database retrieval system
