Desulfovibrio piger: DESPIGER_1101
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Entry
DESPIGER_1101 CDS
T04638
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dpg
Desulfovibrio piger
Pathway
dpg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dpg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DESPIGER_1101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpg03021
]
DESPIGER_1101
03400 DNA repair and recombination proteins [BR:
dpg03400
]
DESPIGER_1101
Enzymes [BR:
dpg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DESPIGER_1101
Transcription machinery [BR:
dpg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DESPIGER_1101
DNA repair and recombination proteins [BR:
dpg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DESPIGER_1101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
BSH_YknX
Apocytochr_F_C
Peptidase_M23
BSH_RND
Motif
Other DBs
NCBI-ProteinID:
SFV72960
UniProt:
A0A1K1LE26
LinkDB
All DBs
Position
I:1176339..1180508
Genome browser
AA seq
1389 aa
AA seq
DB search
MSLDDLFTARGTSANVTNIRNLKAIQISIASPEAIREWSYGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIW
FLKTLPSKIGTLLDMTMADLEKVLYFDSYIVLDPGQTNLQRRQVISEDQYLQILDHYGTE
DALTVGMGAEAVRSLLEELDLEKLRTELREESETTKSQTKKKKLTKRLKIVEAFLESNNK
PEWMIMEVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELGAPDIIIR
NEKRMLQEAVDALFDNGRRGRAIAGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRS
VITVGPYLKLHQCGLPKKMALELFKPFIYSELEKRGYASTIKSAKKMVEREELVVWDILS
EVVREYPIMLNRAPTLHRLGIQAFEPLLVEGKAIRLHPLVCSAYNADFDGDQMAVHIPLS
VEAQIECRVLMMSTNNILSPANGGPVIVPSQDIVLGLYYMTSERSFEKGEGMTFCGPWEV
EAAYDADAVSLHARINVRMPDGKKYRTTPGRVLVSNILPKEMSFENVNLVLTKKMIAKLV
ENCYRQCGIKATVILCDNLKNMGYEFATRAGVSIGVKDLIIPARKKDILAASQAEVDDIE
RQYRDGIITRTEKYNKVVDVWTKATQDVSTEMIKEISYDILKDPKTGREEKNQSFNSIFM
MSTSGARGNQDQMRQLAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGLA
DTALKTANSGYLTRRLVDVVQDVIVSEHDCGTVDGIELTHLREGGDIKTPVWERAMGRVL
LYPVYDPEDAEKVLLPENTLIDEAEAAVLREHGVSSITVRSPLTCQAERGICALCYGRDL
ARGHLVNTGETVGIIAAQSIGEPGTQLTMRTFHIGGTASSTIEKNKFEAQNTGRVILNRV
RAVTNRDGIQLVLGKSGQLTIVDPQGREREKYILPNGARLHVTDGQEVTKGTVLAEWDPF
NEPFVSEEEGIIRFTDIVDGKTVQEKVDDVTRQASLTIMEYRTTNYRPSISVCDENGNVK
QRPHSVASAVYSLPVGSIIMVKDGEAIQAGDIIARKPRETSKTKDIVGGLPRVAELFEVR
KPKDMAVVSEISGTVSYAGESKGKRKLVVTPEIGDAKEYLVPKGKHITVADGDFVEAGDP
LTEGSPELHDILRTRGEKYLARYLVDEIQEVYRFQGVGIDDKHIEVIVRQMLKKVTVLDS
GGTSFLVGEQVDKAEFKAENHKAIIEGRQPATAEPLVLGITQASLTTSSFISAASFQETT
KVLTEASLKGKMDYLRGLKENVIVGRLIPAGTGYREYVHGDITVPDQKERPDKFLEDLEE
NPVLVDLGQ
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgagcctggacgatctcttcactgcacgcggcacgtcggccaatgtgaccaacatccgc
aacctgaaagccatccagatttccatcgcctcgcccgaagccatccgcgaatggtcctac
ggtgaggtcaagaaaccggaaaccatcaactaccgtaccttcaagccggagcgcgacggc
ctgttctgcgccaagatcttcggccccgtgaaggactacgagtgcaactgcggcaagtac
aagcgcatgaagcaccgcggcatcgtctgcgaaaagtgcggcgttgaagtcattgcctcc
aaggtgcgccgcgagcgcatgggccacatcgaactggccgcgcccgtggcccacatctgg
ttcctcaagaccctgccctccaagatcggtaccctgctcgacatgaccatggccgatctg
gaaaaggtcctgtacttcgattcctacatcgtgctcgatcccggccagaccaatctgcag
cgccgccaggtcatctctgaagaccagtacctgcagatcctggaccactacggcaccgaa
gacgccctgaccgtgggcatgggcgccgaggccgtgcgctcccttctggaagagctggat
ctggaaaagctgcgcaccgaactgcgcgaagaaagcgagaccaccaagagccagaccaag
aagaagaagctcaccaagcgcctgaagatcgtcgaggccttcctggagtccaacaacaag
cccgaatggatgatcatggaagtcattcccgtcatcccgccggagctgcgtcccctggtg
cccctggacggcggccgtttcgccacctccgacctcaacgacctgtaccgccgcgtcatc
aaccgcaacaaccgtctgaagcgcctcatcgaactgggcgctcccgacatcatcatccgc
aacgaaaagcgcatgttgcaggaagccgtggacgccctgttcgacaacggccgccgcggt
cgcgccatcgccggtaccaacggtcgtccgctcaagtccctgtccgacatgatcaagggc
aagcagggccgcttccgccagaacctgctgggcaagcgcgtggactactccggccgttcc
gtcatcaccgtgggcccctacctcaagctgcaccagtgcggcctgcccaagaagatggcc
ctggagctgttcaagcccttcatctattcggagctggaaaagcgcggctacgcctccacc
atcaagagcgccaagaagatggtggagcgtgaggagctggtggtctgggacatcctctcg
gaagtggtgcgcgaataccccatcatgctcaaccgtgcccctaccctgcaccgcctgggc
atccaggcctttgagcccctgctggtggaaggcaaggccatccgtctgcatcccctggtc
tgctcggcctacaacgccgacttcgacggtgaccagatggccgtgcacatcccgctttcc
gtggaagcgcagatcgaatgccgcgtgctcatgatgagcaccaacaacatcctctcgccc
gccaacggcggtcctgtcatcgtgccttcccaggacatcgttctgggcctgtactacatg
acctccgagcgcagcttcgagaagggcgagggcatgaccttctgcggtccctgggaagtg
gaggccgcctatgacgccgatgccgtgtccctgcacgcccgcatcaacgtgcgcatgccc
gacggcaagaagtaccgcaccacgcccggccgcgtgctggtgagcaacatcctgcccaag
gaaatgtccttcgagaacgtcaacctggtgctgaccaagaagatgatcgccaagctggtg
gaaaactgctatcgccagtgcggcatcaaggccacggtcatcctctgcgacaatctgaag
aacatgggttatgagttcgctacccgcgccggtgtcagtatcggtgtgaaggacctcatc
atcccggcccgcaagaaggacatcctggccgcttcccaggccgaggtggacgacatcgaa
cgccagtaccgcgacggtatcatcacccgtaccgaaaagtacaacaaggtcgtcgatgtg
tggaccaaggccacccaggacgtctccacggaaatgatcaaggagatctcgtacgatatc
ctgaaggatcccaagaccggccgtgaagagaagaaccagagcttcaactccatcttcatg
atgtccacctccggtgcccgaggcaaccaggaccagatgcgccagctggccggtatgcgc
ggtctgatggccaagccttccggtgagatcatcgaaacgcccatcacctcgtccttccgc
gaaggcctgtcggtgctgcagtacttcacctccacccacggcgcccgcaagggtctggcc
gacaccgccctgaagacggccaactccggttacctgacccgccgtctggtggacgtggtg
caggacgtgatcgtctccgaacacgactgcggcacggtggacggcatcgagctgacccac
ctgcgcgaaggcggcgacatcaagaccccggtgtgggaacgcgccatgggccgtgtgctg
ctctaccccgtctacgatcccgaagacgcggaaaaggtgctgctgcccgagaacaccctc
atcgacgaggccgaggccgctgtgctgcgtgaacacggcgtcagctccatcacggtgcgc
tcgcccctcacctgccaggccgagcgcggcatctgcgccctgtgctacggccgcgacctg
gcccgcgggcacctggtcaacaccggcgagaccgtgggcatcatcgccgcccagtccatc
ggtgaacccggcacccagctgaccatgcgtaccttccacatcggcggtaccgcatccagc
accatcgaaaagaacaagttcgaagcccagaacaccggccgcgtcatcctcaaccgcgtg
cgcgccgtcaccaaccgcgacggcatccagctggtgctgggcaagagcggccagctgacc
atcgtggatccgcagggccgcgaacgcgaaaagtacatcctgcccaacggcgcccgcctg
catgtgaccgacggtcaggaagtgaccaagggcaccgtgctggccgagtgggaccccttc
aacgaacccttcgtgtccgaggaagagggcatcatccgcttcaccgacatcgtggacggc
aagaccgtgcaggaaaaggtggacgacgtgacgcgtcaggcctccctgaccatcatggaa
taccgcaccaccaactaccgcccgtccatctcggtctgcgacgagaacggtaacgtcaag
cagcgtccgcacagcgtggcgtccgccgtgtacagcctgcccgtgggctccatcatcatg
gtcaaggacggcgaggccatccaggccggcgacatcatcgcccgcaagccccgcgaaacg
tccaagaccaaggacatcgtgggtggtcttccccgcgtggccgagctcttcgaagtccgc
aagcccaaggacatggccgtggtctccgagatctccggcaccgtgtcctacgccggcgaa
tccaagggcaagcgcaagcttgtggtgacccccgagatcggtgacgccaaggaatacctg
gtgcccaagggcaagcacatcaccgtggccgacggcgactttgtggaagccggcgatccg
ctgaccgaaggttcgcccgagctgcacgacatcctgcgcacccgcggtgaaaagtacctg
gcccgctacctcgtggacgagatccaggaagtgtaccgcttccagggcgtgggcatcgac
gacaagcacatcgaagtcatcgtgcgccagatgctcaagaaggtcaccgtgctggattcc
ggcggcaccagcttcctggtgggcgagcaggtggacaaggccgagttcaaggccgagaac
cacaaggccatcatcgaaggccgccagcccgccaccgccgaaccgctggtgctgggcatc
acccaggcctcgctgaccacctcgtccttcatctcggcggcttccttccaggaaaccacc
aaggtgctcaccgaggcttccctcaagggcaagatggactacctgcgcggcctcaaggaa
aacgtcatcgtgggccgtctcatccccgccgggacgggctatcgcgaatatgtccacggc
gacatcaccgtgcccgaccagaaggaacgcccggacaagttcctggaggatctggaagag
aaccccgtgctggtggatctgggccagtag
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integrated database retrieval system
