Desulfovibrio piger: DESPIGER_1799
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Entry
DESPIGER_1799 CDS
T04638
Name
(GenBank) Exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dpg
Desulfovibrio piger
Brite
KEGG Orthology (KO) [BR:
dpg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dpg03016
]
DESPIGER_1799
Enzymes [BR:
dpg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DESPIGER_1799
Transfer RNA biogenesis [BR:
dpg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DESPIGER_1799
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
BRD4_CDT
Motif
Other DBs
NCBI-ProteinID:
SFV73629
UniProt:
A0A1K1LFZ1
LinkDB
All DBs
Position
I:1906287..1908416
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AA seq
709 aa
AA seq
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MSVCVQYPSAGCIVEYLEGNAVQIALVTEESGGKLRLLLPNRRETRLTTSRLLPWAGPAL
GSVPGKDESARLLEQHRARREELAAALPVLELWEMSQGEVPEASAQWFAELAGQAGDADS
VAACGRALLACKSHFRFQPPVFQIFSAGMVEKRLREQQERAAREALVLGGNSFFRLLWDV
ACKKRALPPRPGGDCRGMSEWPAPEVAERLKQILFARMADPENQEYDELWRMLSKGLPDV
PHLPVQLLMAWEQVPAHYNFWYDRAGYAPGDDWWRPLAPAVEALQRAARQVELPVCDLPF
ISIDSATTRDVDDAFHILPTDDGGFELTLALACPAACWPFGEPLDKAVFRRGTSIYLPEG
DSHMMPEVLGTDAFSLLAGQDRPAFCVKTRISAAGEILSCEPRAARVRLAANLTYDDTQA
VLDALASGEAPQADNPAAPWAAMLACGNDFAHVWQKARIARGAVIMDRPEPSIVLEGQGA
QTRVSIEPGHETPDSQPLVAEMMILASAAVAQWAAEREIPMLHRTQDVALPREYAGVWKE
PQDMTRIMRALIPSSLEVQARPHAALGLARYTPMTSPLRRYPDLINEAQLLHWLTHGTPR
WDSEALSTLLVSLNAVLDAAGQVQRFRPRYWKLLYFRQQGDKVWWDGVVTEENDMFVNVS
LPAQGMYVRGKRRMFDERTCPGMAVQVRIGRVHPLYNEIQILEAVSMDG
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtttgtgtgcagtacccctcggcgggctgcattgtggaatatcttgaaggcaat
gccgtccagatcgcgctggtcaccgaggaatccggcggcaaactgcgtcttttgctgccc
aaccggcgcgagacgcgtctcaccacgtcgcgcctgctgccctgggccgggcccgcgctg
ggctccgtgcccggcaaggacgagtccgcccgcctgctggagcagcaccgtgcccgccgc
gaggaactggccgcggccctgcccgtgctggaactgtgggagatgagccagggcgaagtg
ccggaagcctcggcccagtggttcgccgaactggccgggcaggccggggacgccgacagc
gtcgccgcctgcgggcgcgccctgctggcctgcaagagccacttccgcttccagccgccc
gtcttccagatcttttccgccgggatggtggaaaaacgcctcagggaacagcaggaacgc
gccgcccgcgaggccctggtgctgggcggcaacagctttttccgcctgctctgggacgtg
gcctgcaaaaaacgcgcgctgccgccccggcccggcggagactgccggggcatgtccgaa
tggccggcccccgaagtggccgaacgcctgaagcagatcctgttcgcccgcatggccgac
cccgagaaccaggaatacgacgaactgtggcgcatgctctccaagggcctgcccgatgtg
ccgcacctgcccgtgcagctgctcatggcctgggagcaggtgcccgcccactacaatttc
tggtatgaccgcgcgggctacgcccccggcgacgactggtggcgccccctggccccggcc
gtggaggccctgcagcgggccgcccgccaggtggaactgcccgtctgcgacctgcccttc
atcagcatcgacagcgccaccacccgcgacgtggacgacgccttccacatcctgcccacg
gacgacggcggcttcgagctgaccctggccctggcctgcccggccgcctgctggcctttc
ggcgagcccctggacaaggccgtgttccgtcgcggcaccagcatctacctgcccgagggc
gacagccacatgatgcccgaagtcctgggcacggacgccttttccctgctggccggtcag
gaccgcccggccttctgcgtgaagacgcgcatctcggccgcgggcgagatcctttcctgc
gagccccgggccgcgcgggtgcgcctggccgccaacctgacctacgacgacacccaggcc
gtcctcgacgccctggcctccggcgaggccccgcaggcggacaaccccgccgcgccctgg
gccgccatgctggcctgcggcaacgacttcgcccacgtctggcaaaaggcccgcatcgcg
cgcggggccgtcatcatggaccggcccgaaccgtccatcgtgctggaaggccagggcgcg
cagacgcgcgtctccatcgagcccggccacgagaccccggactcccagccgctggtggcc
gagatgatgatcctggccagcgccgccgtggcccagtgggcggcggagcgcgagatcccc
atgctgcaccgcacccaggacgtggccctgcccagggaatacgccggtgtctggaaggaa
ccccaggacatgacgcgcatcatgcgcgccctgatcccctccagcctcgaagtgcaggcc
cggccgcacgccgccctgggcctggcgcgctacacgcccatgacctcgcccctgcgccgc
tatcccgacctcatcaacgaggcccagctgctgcactggctcacccacggcacgccccgc
tgggacagcgaggccctgtccaccctgctggtcagcctcaatgccgtgctggatgccgcc
gggcaggtgcagcgcttccgcccgcgctactggaagctgctctacttccgccagcagggc
gacaaggtctggtgggacggcgtggtcaccgaagagaatgacatgttcgtcaacgtgagc
ctgcccgcacagggcatgtatgtgcgcggcaaacgccgcatgttcgacgagcgcacctgc
cccggcatggccgtgcaggtgcgcatcggccgcgtgcacccgctgtacaacgaaatccag
atcctcgaagccgtcagcatggacggctga
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