Desulfovibrio piger: DESPIGER_2198
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Entry
DESPIGER_2198 CDS
T04638
Name
(GenBank) Superfamily II DNA and RNA helicases
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dpg
Desulfovibrio piger
Pathway
dpg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DESPIGER_2198
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpg03019
]
DESPIGER_2198
03009 Ribosome biogenesis [BR:
dpg03009
]
DESPIGER_2198
Enzymes [BR:
dpg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DESPIGER_2198
Messenger RNA biogenesis [BR:
dpg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DESPIGER_2198
Ribosome biogenesis [BR:
dpg03009
]
Prokaryotic type
rRNA helicases
DESPIGER_2198
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RhlB
Motif
Other DBs
NCBI-ProteinID:
SFV74020
UniProt:
A0A1K1LH23
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All DBs
Position
I:2352529..2354259
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AA seq
576 aa
AA seq
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MSDITDPTCPASAGEAAQEQAAPAAELSTPGASLENFSVAEPENALPRATLETLPEAIAA
ACGRAGWTSLMPVQSLALPYLLEGRDIMVQSRTGSGKTGCYLLPLVPRLDPALHAVQALI
LVPTRELAVQVEHEARTLFEGTGIRPVAVYGGVGYKKQMDALRDGAQLVVGTPGRVLDHL
LRRTLSLDDLDALVFDEADRMLSIGFYPDMKEVQRYLPRHRIHTSMFSATYPPHVLKLAG
EFLTEPSMLSLSQKEVHVAEVQHLFCQSRPMDKDRVLVRLLETENPASAIIFCNTKANVH
YITGVLQGFGYNADELSADLSQARREAVLDKIRQGSLQYLVATDVAARGIDIPALSHVFL
YEPPEDHESYIHRAGRTGRAGAAGTVISLVDIMQRMELERIARHYRIALREIPAPTDADV
AVVAGARVTTLLEGRFRKLTGLEKMRVARYAPLVRELAGQAEDDEDGLLLAMLVDAAYQE
SLGHVQQLPEGRNESSRRGDGEGRGRKRSSRRRRDRGDRADEAAAPGAHAPAEAAAAAAP
ATDAGDAPAPAEGEGTARRRRRRRRRKPAAEGQAEA
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacatcaccgatcccacctgccccgcctccgccggagaggccgcgcaggaacag
gccgcccctgcggccgaactttccacccccggcgcttcccttgagaatttttccgtggcc
gagcccgagaacgccctgccgcgcgccacgctggagaccctgcccgaagccatcgccgcc
gcctgcggccgtgcgggctggacgtccctcatgcccgtgcagtccctggccctgccctat
ctgctggaaggccgcgacatcatggtgcagtcccgtaccggcagcggcaagacgggctgt
tacctgctgcccctggtgccgcgtctggatcccgcgctgcatgccgtccaggccctgatc
ctggtgcccacccgcgagctggccgtgcaggtggagcacgaggcgcgcaccctgttcgaa
ggcacgggcatccgtcccgtggccgtctatggcggcgtgggctacaaaaagcagatggac
gccctgcgtgacggggcccagctggtggtgggcacgcccggccgcgtgctggaccatctg
ctgcgccgcaccctctcgctggacgatctggatgccctggtcttcgacgaggccgaccgc
atgctgtccatcggcttctaccccgacatgaaggaagtgcagcgctacctgccgcgccac
cgcatccacaccagcatgttctcggccacctatccgccgcatgtgctcaagctggccggg
gaattcctgaccgagccctccatgctctccctgtcgcagaaggaagtgcatgtggccgaa
gtgcagcacctgttctgccagagccgccccatggacaaggaccgcgtgctggtgcgcctg
ctggagaccgagaacccggcctcggccatcatcttctgcaacaccaaggccaacgtccac
tatatcaccggcgtgctgcagggcttcggctacaatgccgacgagctgtcggccgacctt
tcccaggcccgccgcgaggccgtgctggacaagatccgccagggcagcctgcaatatctg
gtggccacggacgtggccgcgcgcggcatcgacatcccggccctgtcccacgtctttctg
tatgagcccccggaagatcacgagagctacatccaccgtgccggacgcacgggccgcgcc
ggggccgccggtacggtcatctcgctggtggacatcatgcagcgcatggagctggaacgc
atcgcccgccattaccggatagccctgcgcgagatccccgcgcccacggacgcggatgtg
gccgtggtggccggcgcgcgcgtgaccaccctgctggagggccgtttccgcaagctgacc
ggtctggagaagatgcgcgtggcccgctatgcgccgctggtgcgcgagctggccggccag
gccgaggacgacgaggacggtctgctgctggccatgctggtggatgccgcctatcaggag
agcctgggccatgtgcagcagctgcccgaaggccgcaacgagtcctcccgccgtggtgac
ggcgaaggccggggccgcaagcgttcctcccgccgtcgccgtgaccgcggggacagggcc
gacgaagccgccgcccccggggcccatgctcctgcggaggccgcagcggcggccgcgccc
gcgacggatgccggggacgctcccgctcccgccgaaggggagggcacggccaggcgccgc
cgtcgtcgccgtcgccgcaagcccgcggctgaaggccaggcggaggcatga
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