Deinococcus psychrotolerans: EHF33_03055
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Entry
EHF33_03055 CDS
T07550
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dph
Deinococcus psychrotolerans
Pathway
dph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EHF33_03055 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dph03019
]
EHF33_03055 (rnr)
03016 Transfer RNA biogenesis [BR:
dph03016
]
EHF33_03055 (rnr)
Enzymes [BR:
dph01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EHF33_03055 (rnr)
Messenger RNA biogenesis [BR:
dph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EHF33_03055 (rnr)
Transfer RNA biogenesis [BR:
dph03016
]
Prokaryotic type
tRNA degradation factors
EHF33_03055 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
AZI41853
UniProt:
A0A3G8YAD1
LinkDB
All DBs
Position
1:complement(627429..631706)
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AA seq
1425 aa
AA seq
DB search
MQALSLDDRRRTALRLRSVLNRCKVPRKKQERPAPTDSQVAALPVPIAVDEKSAEAASRS
LQQAAPRRRSNATSKPSAEVIPPQALQQAASSNSSGPSKKVPSIPKTNSSKIKSARTKPT
TQVEPLPAELRPELTAAPSPKPQSKGRKSKVQEPESQVLENRIEAAPIVQSKPAKASKRS
PTKRSESAEVLPSAVVSESEVTPAEPKLSAALQRKGRQKAEVQAKLPEQPAQTVQAQLLP
EPVLVEPVTADAPPEPEPAQMPVTAGTPKPKAANRQRRTAKSAVAPEIELGAAQAAVSLP
QLAEPEPLPMSADEQSSPPKRGKRRKVAESAPEAQLDAASTIQPILETLEAAPSEEAEPV
AAEPALEAQPPAEGAPGEPDLDAAQIRRRERTPKGTRLKRGERPAVAVVDALPESDAQVT
QPQHAETSQLVQVSAAHAVSPEAKELIIEQLRKLGRPVHVRDFERTFTRQGRERLGVRRD
LAGLLEDLTLSGDVIRTRRHTYGLPEAMNLVRGRFQASTGGFGFVIPDSGGDDFYIREGE
TLEAWNGDIVLIRPEGRNGGNDRYERGGGGNRSRRDSSPRAAVVRIVSRAYSQLVGSLDH
QATYAFLKPDDHRARHRIMLMPDGTEGLPNGARVVTQLFWPEDTGEDEVYGEIVRVLGNE
DDPATETQAVIVKYGLRDEFPPEVLEEAERIPLKLPDSALRERLDLRDYHIFTVDGSDAK
DFDDAIHIQATPEGTFVVGIHIADVSHYVQPGTAIDEEAYARATSVYLPGAVLPMLPEHL
SNGVCSLVEGEDRLTMSAMIELSGDGEVLSTAFTPSVIRSKARLTYDEVQAYSEAVATLQ
GSARILEGDLHLLLKITAKLRQKRLREGSLDFKLREVKVDVDKDGHMQLIPLREETARGM
IEDLMLLANKAVAHFLLEKNAPTLFRIHEEPTMARFQEVSAAIGRMGLAFPGGEPTPQAY
QSVLKAVRGTSQESVVNTLLLRSMQQAKYAEENLGHFGLAFEEYLHFTSPIRRYPDLLVH
RALKAALSGPVTDRVRAELAAPLTEQGRHTSERERNASDAERDLTKYYQAKWAQEHLDES
FEGRVSGVIASGLFVVLENGVEGRLHISNLGDDYYFYIEDASILKGRTSGRIYRIGENID
VTISGVNPLARQIDFTQAEQTQENSMDGNDNRPRARRREDRETQKREKLSSFLPRKNGEA
EPQAAPDDVQEPQDQAQSAQSRSTQSVQPSQPMQSARREQGSGPRRDSPRNDTSRNDTSR
SDSPRSDSARTDTRSERPRQGGVQSGTQNSSGPRTGGYRRRVVTLDRPRNEHLRPVNVTV
QRMYFGDWTLENMPPDEGPGREQGSYRSGGAQQFRGRSQSGAGAGPRSDTPRNTRQPRNE
AQSQRLQPAASATAAGATGDTAESAADEARRRRRRRGRRGGNGPS
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atgcaggccctgtcacttgatgaccgacgccgcactgcgctgaggctacgctccgtcctg
aacaggtgcaaagtgccgagaaagaaacaggagcgcccagcgcccaccgacagtcaagtt
gctgctttgcccgttccgatcgccgtggacgaaaagagcgccgaagccgccagccgcagc
cttcaacaagccgcgccgcgccggaggagcaacgccacttccaagccgagtgccgaagtg
attcccccacaagccctccagcaagcagcgtccagcaactccagtgggccaagcaaaaag
gtgccgagcatccctaaaaccaattcatctaaaatcaaatccgcccgaaccaaaccgacg
acgcaggttgagccgctccccgccgagctgcggcctgagcttaccgccgcaccttcgcca
aagccccagtcaaagggccgtaaaagcaaggtgcaggagccagagagtcaagttctagaa
aaccgaattgaagctgccccgatcgtgcaaagtaagccagccaaagcctccaagcgctcc
ccaaccaagcgcagtgaaagtgcagaagtgcttccgagtgcagtggtcagcgagtctgaa
gtcacgcccgctgagcccaagctgagcgccgcgctgcaaagaaaaggccgccaaaaagcg
gaagtacaggctaaactcccagagcagcccgcgcaaacggttcaagcgcagcttttgcct
gagccggtgctggtcgaacccgtaactgcggacgcgccaccagagcctgaacctgctcaa
atgcccgtgacagccgggacgcccaaacccaaggcggccaaccgtcaacgccgcaccgcg
aaatctgctgttgcgcctgagatagaattgggcgctgctcaggcggctgtgtccctgcct
caattggccgagcctgagccgctccccatgtcagctgacgagcagtccagcccgcccaaa
cgtgggaagcgccgtaaggtcgccgagtcagcgcctgaagcccaactcgacgccgcatcc
accatccagcccattcttgaaacgctggaagccgctccaagcgaagaagccgaacctgtg
gccgccgaacctgctctggaagcgcagccgccagccgagggggctcccggcgaaccagat
ctcgacgcggcccaaattcgcaggcgtgagcgcacccccaaaggcacccgcctgaagagg
ggagagcggccagcagtggcagtggtcgacgcgctacccgagtcagacgcccaagttacc
cagccccaacacgctgaaaccagccagcttgttcaagtttcggcggctcacgctgtcagc
cccgaggccaaagaactgatcatcgagcagctccgcaaactgggccgtccggtgcatgtc
cgtgatttcgagcgcacctttacccgtcagggccgtgagagattgggcgtgcggcgcgac
ctcgcgggcctcttagaagacctgaccctcagcggcgacgtgattcgcacccgccgccac
acctacggactgcccgaagccatgaatttggtgcggggccgctttcaagcgtcgactggc
gggttcggttttgtcattcccgattcgggcggcgacgacttttatattcgggaaggtgaa
acgctcgaagcctggaacggcgacatcgtgctgattcgccccgaaggccgcaatggcggc
aacgaccgttatgagcgcggcggtggcggaaaccgcagtcgccgcgacagttcgccccgc
gccgccgtggttcgcatcgtcagccgcgcttactcgcagcttgtcggctcgctcgaccat
caggccacctacgctttcctcaagcccgacgaccaccgcgcccgccaccgcatcatgctg
atgccggacggcaccgaggggcttcccaacggggcgagagtcgtgacgcaactgttttgg
cccgaagacaccggcgaagacgaagtgtacggcgaaatcgtgcgggtgctgggcaacgag
gatgatcctgccaccgaaacccaagccgtgatcgtcaaatacggtctgcgcgacgaattt
cctccggaagttttggaggaagccgaacgcattcccctcaagctgcccgactcggccctg
cgtgagcggctggatttgcgcgactaccacatcttcacggtggacggcagcgacgccaaa
gacttcgacgacgccattcacattcaggcgacgccggaaggtaccttcgtggtgggcatt
catatcgctgacgtgagccattacgtgcagcccggcacggcgattgacgaagaagcctac
gcccgcgccaccagcgtctacctccccggcgcggtgctgccgatgctgcccgaacacctc
agcaacggggtgtgcagcttggtggaaggcgaagaccgcctgaccatgagcgccatgatc
gagctgtccggcgacggcgaggttctcagcaccgcgtttacgcccagcgtgattcgcagc
aaagctcgcctgacttacgacgaggtgcaggcctactcggaagcggtggcgaccttgcag
ggcagcgcccgcatcttggaaggcgatttgcatctgctgctcaaaatcaccgccaagctg
cgtcaaaagcggctgcgggaaggcagcctcgatttcaaattgcgcgaagtcaaagtggac
gtggacaaagacggtcatatgcagcttattccgctgcgcgaggaaaccgcacgcggcatg
atcgaggatttgatgctgctggccaacaaagcggtggcgcatttcctcctcgaaaaaaat
gcgccgacgctgttccgcatccacgaagagccgacgatggcccgctttcaagaagtcagc
gccgcgattggccgcatggggctggctttccccggcggcgaaccaactccgcaggcctac
caatcggtgctcaaggccgtgcgcggcaccagtcaggaaagtgtggtcaataccttgctg
ctcaggagtatgcagcaggccaagtacgccgaggaaaacctgggtcacttcggcctagcc
tttgaggagtacttgcactttacctccccgattcgccgctatcccgacttgctggttcac
cgggcacttaaagcggcgctgagcggccctgtcaccgaccgggtgcgggccgagctcgcc
gcgccgctgaccgagcagggccgtcacacttccgagcgcgagcgtaatgccagcgacgct
gagcgcgatttgaccaagtattaccaagccaagtgggcgcaggagcacttagacgaaagc
tttgagggccgcgtctcaggcgtgatcgcttcgggcctgttcgtggtcttggaaaacgga
gtggaaggccgcctgcacatctccaacctcggcgacgactactacttttatatcgaagac
gccagcatcctcaaaggccgcacttcgggccgcatctaccgtataggcgagaacatcgac
gtgaccatcagcggcgtgaatccgctggcccgccaaattgacttcactcaagcagaacaa
actcaggagaacagtatggacggcaacgacaaccgcccccgcgctcgccgccgcgaagac
cgcgaaacgcaaaagcgcgagaaactcagcagcttcttgccacgtaaaaatggcgaggca
gagccccaagccgcccccgacgatgtgcaggagccgcaagaccaagctcaatcggcgcag
tcccgatccactcagtctgtgcagccgagccagcctatgcagtcggcccgccgcgagcag
ggcagtggcccgcgtcgtgacagcccccggaatgacacctcgcgcaacgatacctcccgc
agtgacagccctcggagtgacagcgcccgcaccgacacccgctcggagcgtccacgtcaa
ggcggtgtgcaaagcggcactcagaattccagcggcccgcgcactggcggttaccgccgc
cgagtcgtcaccctagaccgcccccgcaacgagcatttgcgccccgtgaacgtcacggtt
cagcggatgtacttcggtgattggacgctggagaacatgccgcccgacgaggggccgggc
cgcgagcaaggcagctaccgcagcggcggcgctcagcagtttcggggccgtagccaaagc
ggcgctggtgcaggcccgcgcagcgacaccccgcgcaacacccgccagccgcgtaacgaa
gcccaaagccagcgcctccagcctgctgccagtgccactgccgccggtgctaccggcgat
actgccgagagtgctgccgacgaagcccgccgccgccgccgccgtcgtggccgccgtgga
ggcaacgggccgagctaa
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