Deinococcus psychrotolerans: EHF33_09425
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Entry
EHF33_09425 CDS
T07550
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dph
Deinococcus psychrotolerans
Brite
KEGG Orthology (KO) [BR:
dph00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dph03016
]
EHF33_09425
Enzymes [BR:
dph01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EHF33_09425
Transfer RNA biogenesis [BR:
dph03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EHF33_09425
Prokaryotic type
tRNA splicing ligases
EHF33_09425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AZI42937
UniProt:
A0A3G8YFH7
LinkDB
All DBs
Position
1:1908713..1910113
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AA seq
466 aa
AA seq
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MNGKYITKLGFTNKSIGLALAAAQLREAAGLERSAILDELSKVKADPAGFQSGVYADLVR
ELLTQQAHTDLHAADALRSAALPYAQFGAALIDQGARDQMNVAMRLPITRAGALMPDAHV
GYGLPIGGVLAAENAVIPYGVGVDIGCSMRLSVFAVPADTLKTAEALALLQKHTRFGAGV
SFERRERIGHDVLDEAVWDDQPILRRLHDKAADQIGSSGSGNHFAEFGSFTLGQSELGLD
AGTYLALLTHSGSRGFGAQVAGHFTKLAESLHPTLHPSAKKLAWLSLDSEEGQAYWQAMN
LAGRYALANHEQIHARIAKALGQTPALSAHNSHNLAWKEQVGGSELIVHRKGATPAAAGQ
LGLIPGSMADPGYLVRGKGHAPSLASASHGAGRQLGRKAAQNTLSKSEVSAYLKDKGVTL
LGGGIDEAPQAYKRIQDVIAAQSELVDVLGEFRPKVVRMDSGSEDI
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcaaatacatcaccaaactgggatttaccaacaaaagcattgggctggctctg
gccgccgcgcagcttcgggaagcggctggcttggagcgcagcgccattctggatgaactt
tcaaaggtcaaggccgatccggctggctttcaaagtggcgtctacgccgacttggtgcgc
gagttgctgactcagcaggcccacaccgacctgcacgccgccgacgccctgcgctccgcc
gccttgccgtatgcccaatttggcgcggccctgatcgatcagggcgcacgcgatcaaatg
aacgtggcgatgcgcttgccaatcacccgcgccggagcactgatgcccgacgcccacgtc
ggctacgggctgccgattggcggcgtgctggccgctgaaaacgcggtgatcccttacggt
gtgggggttgacattggctgctcgatgcgcctctccgtctttgccgtgcccgccgatacc
ctcaaaactgccgaagcactggccctcctgcaaaagcacacccgcttcggtgctggcgtc
agcttcgagcgccgtgagcgcatcggccacgacgtcttggacgaagcggtttgggatgac
cagccgatcttgcgccggttgcacgacaaagccgccgatcaaatcggctcctcgggcagc
ggcaaccatttcgccgagttcggcagctttacgctgggtcaatcggaattgggattggac
gccggaacgtacctcgccctgctcacccacagcggctcacgcggctttggggcgcaggtg
gcgggtcacttcaccaagctggccgagagcttgcacccgaccctgcatcccagcgccaaa
aagctggcctggctcagcttggacagtgaagagggccaggcgtattggcaggccatgaac
ctggcgggccgttacgcgctggccaaccacgagcagattcatgcccgaatcgccaaagcg
ctgggccagacgcccgcattaagcgcccacaacagccacaacctggcctggaaagagcag
gtcggcggctcggaactcatcgttcaccgcaagggagccacccctgccgccgccggacaa
ctcggcctgattcccggcagcatggccgatccagggtacttggtgcgcggcaaaggtcac
gctccttcgctggccagcgcttcgcacggcgcgggccgccaactcgggcgcaaagccgct
cagaatacgctgagcaagtcggaagtcagcgcttacctgaaagacaaaggcgtgaccctg
ctcggcggcggcatcgacgaagcgccgcaggcttacaagcgcattcaggacgtgatcgct
gctcagagcgaattggtggacgtgttgggcgagttccggcccaaagtggtcagaatggac
agcggcagcgaagacatctga
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