Pseudodesulfovibrio piezophilus: BN4_20008
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Entry
BN4_20008 CDS
T02481
Name
(GenBank) putative UvrD/REP helicase
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
dpi
Pseudodesulfovibrio piezophilus
Brite
KEGG Orthology (KO) [BR:
dpi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpi03400
]
BN4_20008
Enzymes [BR:
dpi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN4_20008
DNA repair and recombination proteins [BR:
dpi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
BN4_20008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CCH50070
UniProt:
M1WMZ2
LinkDB
All DBs
Position
3080042..3083176
Genome browser
AA seq
1044 aa
AA seq
DB search
MSKKIELISASAGSGKTYSLTERFVKSLDEGVRPESVVATTFTKKAAQEIGSRFRSKLFE
QGRAEDAQRVFGGYIGTVNAVCGALLKDYAFEVGQSPTLEVVPDGEDAALFRVAAADAVG
RKARQIVPLVRSLEIEKWEDIVKGIIDKARANAIDRKMMLESGERSWELLRELMPDPISE
TEGKKLDTEIVRELKRTIGALPSDGDTSKGTLGAKKDLQAIHRTLSQESIPNWATWAKLS
KIKPTSKSAHEVETLHELAGQFLQHPRFHNEVRQLITLLFDCAAEAAGLYQQHKRTLGLI
DFTDQEALALKMVEDAAVADQLKERLDMVMVDEFQDTSPIQLALFLKLSKLVDRSVWVGD
QKQSIYAFRGSDPALMDAVIDSLGEPETLPNSWRSQSALVDFASEYFAVAFGQLGIPEKR
VRLTSKVRSTTPKSPHLKCWRFESKNKPDDRLCLVGGIQSMLADTAAYAILDKTTKKERT
LKAGDIAVLCMTNDNCRDVAALLEENGIRAAIPRTGLMKRPEIVLVMAAYRYLLSPEDTL
AVAELAKIFGLEDWFSVALQNGMDAVKDLHPMFGRLDDARHELASLTPSEVLDLAIDLSD
AGRMALGWDNPALRQANLDALRGHALGYESTCKARRCACTPAGLINYLHQLKGDDADSQA
VGVGDDTVQVLTYHRSKGLEWPVVILTDLESGEKGKPFGLSVQSSDAPFDLDDPLAGRWL
RYWPWPFGLQKKIEGFSDVVEESDAGRTAFERERRERLRLLYVGMTRARDYMILSARKEG
KGAPTAWLDSYTDAGGNRIVSLPNVAGVAEITVGGKTFPIETVCLTPIGEVTQAVAGQNH
APVLPEKVKAHPPARFVPSSDTIDEDNISVEFFELGAPLLIKATDSRVDLGNAVHAFLAV
ASPEQDEATLRTRAERIVTGLGLKDLTADMLLEMHQRLRTFITTTIDPAGTGEILTEWPI
HLKRGLQKGSGWIDMLCRQPDGDVIIDHKTSLGGKDVLEKKAIGYAGQLATYGEALQKAT
GISGRGMWLHFALAGMMARVNIQG
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagaaaatcgaattgataagcgcgagtgccgggtccggcaagacatactccctg
acggaaagattcgtgaaaagccttgatgagggcgttcggcccgaaagcgtcgtcgccacc
accttcaccaagaaagcggcgcaggagatcggcagccgattccgttcgaagctgttcgaa
cagggacgtgcggaagacgcgcagcgcgtgtttggcggctatataggcacggtcaacgcg
gtctgtggagcactcctcaaggattacgctttcgaggtcggccaatccccgacgttggaa
gtggtgccggacggcgaggatgccgccctcttccgcgtggctgctgccgatgccgtcggt
cgaaaggccaggcagatcgtcccgcttgtgcgctccctggaaatcgaaaagtgggaagac
atcgtcaagggcatcatcgacaaggccagggcgaacgccattgaccgcaagatgatgtta
gaaagcggagagcgttcctgggaattgctcagggagttgatgcccgatccgatttccgaa
accgaaggcaaaaaactcgatacggaaatcgtgcgcgaattgaagcggacgatcggcgca
cttccttccgatggggatacgagcaaaggcaccttgggagcaaaaaaagaccttcaggcc
atccatcgtacgttatcccaagaaagcattcccaattgggctacatgggccaagctgtcc
aaaatcaagcccacatcaaaaagtgcgcatgaggtggaaacgctccatgaactggccgga
cagttccttcaacatcccaggttccacaatgaggtccgccaactcatcactctgctgttt
gactgcgccgccgaagcagcgggcttgtatcaacagcacaagcggaccctggggctgatc
gatttcacggatcaggaagccttggccctgaagatggtcgaggacgccgctgtggccgac
caactgaaagagaggttggacatggtcatggtcgacgagttccaggataccagtcccatc
cagttggccttgttcctcaagctgtccaaactggtggaccggtcggtctgggtgggcgac
cagaaacagtcgatctacgccttccgtggttcggacccggcattgatggatgccgtcatc
gattcgcttggcgagccggagacgctgccgaacagttggcggtcacagtctgccctggtc
gattttgccagcgaatacttcgcggtggccttcggccagctcggcatccccgaaaaacgg
gtgcggctgacctccaaggtgaggtcgaccacgccgaagagtccgcatctcaaatgctgg
cggtttgaatcgaagaacaagcccgatgacaggttgtgccttgttggcggcatccaatcc
atgctcgccgatacggcggcatatgcaattctcgacaagacgacaaaaaaagagcgtacg
ctcaaggccggggatatcgcagtcctctgcatgaccaatgacaattgccgtgatgtcgcc
gccctgctggaagaaaacggcattcgtgccgctattcctcgaacaggactcatgaagcgt
ccagagatcgtcctcgttatggctgcctatcgctaccttctcagtcctgaagacacgctg
gctgtcgctgagctggccaagatatttggcctggaggattggttctcggtggccctgcaa
aacgggatggatgcagtcaaggatctgcatccgatgttcggacgtttggatgatgctcgt
catgagcttgcctcgttgacgccgtccgaggtgctggacctggccatcgacctttccgat
gcgggacgcatggccctggggtgggacaaccctgccctcagacaggccaatctggacgcc
ctcagggggcacgccctagggtatgagtccacctgtaaggcgcggcgatgcgcctgcact
cccgccggtctcatcaattatttgcatcaactgaaaggggacgatgcggactcccaggct
gtcggcgtgggcgacgataccgtccaggtcctgacctatcaccggtccaaggggctcgaa
tggcccgtggtcatcctgacggatcttgagtccggcgaaaaggggaagccgttcgggctg
agcgtgcaatcgtccgacgccccgtttgacctggatgatcccctggctggccggtggctt
cgctactggccctggccctttggtctgcaaaagaaaatcgagggattctccgatgtggtt
gaagaaagcgatgcgggccggaccgcattcgagcgggagcgccgggagcgcctgcgtttg
ttgtacgtcggaatgacgcgcgccagggactacatgattctctcagccagaaaggaaggc
aaaggggcaccgacagcttggcttgactcctatacggatgctggcggcaatcggatcgtg
tccttgcccaacgtggctggagttgcggagattaccgtgggcggaaagacgttccccatt
gagaccgtatgcctcacgccgattggggaagtgacacaggccgttgccggtcaaaaccat
gccccagttttgccggagaaggtgaaggcccatcccccggcccgtttcgtgccgagcagc
gataccatcgacgaggacaatatctctgtggagttcttcgaactgggagcgcccctgctg
atcaaggccacggattcccgcgtggatttgggaaatgcggtgcatgccttcctggcagtg
gcttcaccggagcaggacgaggcgaccctcaggacgcgggcggaacggatcgtgaccggc
ttgggtttgaaagacctcactgccgacatgctgctcgaaatgcaccaacgattgcggacc
ttcatcacaacgacaatcgatccggcaggcacgggcgaaatcctcacggagtggccgatc
catctcaagcgaggattgcaaaaaggcagcggctggatcgacatgctgtgccgccaaccg
gacggcgacgtcattatcgaccataaaacgtcattgggcggcaaagatgtgctggagaaa
aaggcaatcggctatgctggacagttggccacgtatggggaagcacttcaaaaggcgacc
gggatatctggacgggggatgtggttgcatttcgcgttggcggggatgatggctagggtg
aatattcaaggataa
DBGET
integrated database retrieval system
