Pseudodesulfovibrio piezophilus: BN4_20293
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Entry
BN4_20293 CDS
T02481
Name
(GenBank) Ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dpi
Pseudodesulfovibrio piezophilus
Brite
KEGG Orthology (KO) [BR:
dpi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dpi03016
]
BN4_20293
Enzymes [BR:
dpi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BN4_20293
Transfer RNA biogenesis [BR:
dpi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BN4_20293
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Sey1_3HB
Motif
Other DBs
NCBI-ProteinID:
CCH50355
UniProt:
M1WNH5
LinkDB
All DBs
Position
complement(3399515..3401569)
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AA seq
684 aa
AA seq
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MAKKTILSPTVRPGTVVEFMHGDQPQLAWVLEEASGKLRILTINKREIKLPASRLLPWQG
PVAHAEINRQEVQDILNTHQERRGEIQAGLDVMELWELAQGELETAPLTWFAGLLWEEPG
PDEVAALGRAMLTAKTHFKFRPPNFEIWSAEQVEQKMRQKTEEKEREAVIAAGQTLLQEL
WTAFSQGRQPKLPDLDNEVAPHLEAILKGKVAELLDETDRKIWTAISKGLPDIPHIALLL
AQSWGILLPHHNYLLDEAEYQWGNEWSQSYNNEISEIEHGFSNHEHDFDSTDFVSIDAIT
TKDIDDAFHIEKDGTGYRLQIALARPEAHWKFGSPLDKAVMSRATSLYLPEGTAHMMPEQ
LGTGLYSLLAGEKRPTLITEFHFDENGILQSTTPRLGWTRIKTNITYEDADHAIETGTDE
NLVIAHQLAEQLIERRIEAGACVIRKPEPVTALEGQGAQTKVKISLKESSPRSELVISEF
MILANSGLALWAKENDIPLLHRTQDIALPQESAGIFTEPAAILRAVKLLLPPTLETTPKR
HAALAVPAYAPITSPLRRYTDFINMAQVSSFLMSGVPRLDVEELDKLALNLGMRIRSVSA
VQRFRPRYWKLVYLAQRRKEFQSAVVVEDNGSMATLAMPHIQINVRAPKKLLGDKLYPGQ
QFQINFSRVDPLTNEIRIGEALEE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaaagacgattcttagcccgactgtccgccccggcaccgtcgtggaattcatg
cacggcgaccaaccacaactggcctgggtactggaagaagcatccggcaaactccgcatc
ctgaccatcaataaaagagagatcaaactcccggcgtcacgtcttttgccatggcaggga
ccggtcgcccatgctgaaatcaaccgtcaggaagttcaggacatcctgaatactcatcag
gaaaggcgtggggaaatccaagctggtcttgatgttatggagctgtgggagttggcccag
ggagaactggaaacagccccgttgacctggtttgccggactcctctgggaggagcctggg
ccggatgaagtagccgccctcggtcgagccatgctcaccgccaaaacccatttcaaattc
agaccccccaattttgaaatctggtccgcggagcaagtggagcagaagatgcgtcaaaag
acggaagagaaagaacgggaggctgtgatcgctgccggacaaacgctgcttcaggaactc
tggaccgccttcagccagggacgtcaacccaaactccctgaccttgataatgaggtagca
ccccatcttgaagccattctcaagggtaaggtcgcagaactcctggacgaaacagatcga
aaaatatggaccgccataagcaagggactgccggatatccctcatatcgcgctgctgctt
gcccaatcatggggaatcctgcttcctcaccacaattatctcctggacgaagcagaatac
cagtgggggaatgaatggagtcaatcctataataatgaaatcagtgagatagagcatggt
ttttccaatcatgaacacgattttgactctactgatttcgtgagcatcgacgccattacc
accaaagatatcgatgatgctttccatatagaaaaagatggaacaggataccgtctgcaa
atagctttggcccgtcctgaagctcattggaaattcggatcgcccctcgacaaggcagtc
atgagccgtgctacctcgctgtacctgcctgaaggcacggcacacatgatgcctgagcag
ttggggaccggattatacagcctcctggccggagaaaaacgtccgaccctgatcaccgaa
ttccactttgacgaaaatgggatccttcaatcgaccacacccagattggggtggacgcgt
ataaagaccaacattacatatgaagatgcggaccatgccattgaaaccggaacagatgag
aatctcgtcatcgcacatcagttggcagagcagctcatcgaacgccggatagaagccgga
gcctgtgtcattcgcaaacctgaacctgtgacggctcttgaagggcaaggggcacagacc
aaggtgaaaatcagtctcaaggaatcaagcccccgctccgagctggtcatcagtgagttc
atgatccttgccaactcgggactggcgctctgggcaaaagagaatgatatcccgcttctc
cacagaacacaggatattgccctgccacaggaatccgccggaattttcactgaaccggca
gccattctccgtgcggtcaaactccttcttcctccaactctggagaccacacccaaacgg
catgcagccttggcagttcctgcctatgcaccaataacttcccccttgcgacgatatact
gatttcatcaatatggctcaggtcagttcctttctcatgagcggtgttccgcgccttgat
gttgaggaactggataaattggcgctcaatctcggcatgcgtatcaggtctgtcagtgct
gtacagcgattccgccctcgatactggaagctggtctacctggcccagcgccgaaaggaa
ttccaatccgctgtcgttgtggaggacaatggttccatggccacattggccatgcctcac
attcaaataaatgtccgggcacccaagaaactgctgggggacaaactctacccaggccaa
caatttcagatcaacttctcacgggttgacccgttaaccaatgaaatccgtatcggtgaa
gcactggaagaataa
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