Danaus plexippus (monarch butterfly): KGM_204565
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Entry
KGM_204565 CDS
T04344
Name
(GenBank) regulator of nonsense transcripts 1 isoform 3
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dpl
Danaus plexippus (monarch butterfly)
Pathway
dpl03013
Nucleocytoplasmic transport
dpl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dpl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
KGM_204565
03015 mRNA surveillance pathway
KGM_204565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpl03019
]
KGM_204565
Enzymes [BR:
dpl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
KGM_204565
5.6.2.5 RNA 5'-3' helicase
KGM_204565
Messenger RNA biogenesis [BR:
dpl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
KGM_204565
mRNA cycle factors
Common to processing body (P body) and stress granule
KGM_204565
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
ATPase
UvrD-helicase
Helicase_RecD
AAA_16
NPHP3_N
AAA_22
SRP54
nSTAND3
AAA_5
UvrD_C_2
Motif
Other DBs
NCBI-ProteinID:
OWR49957
UniProt:
A0A212F892
LinkDB
All DBs
Position
Unknown
AA seq
1037 aa
AA seq
DB search
MSVDAYGPSSQTLTFLETEEADLIGADTQGSEFEFTDFTLPSQSQTQASQHDHGITSSNQ
INGLGRGDLHSKVSSVANAIAELQFEEEDEALYSSKELPEHACKYCGIHDPATVVMCNIC
NKWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAK
ADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSEAEQMRARQVTPQ
QIGRLEELWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRL
KESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKAWSGVGHV
IKVPDNYGDDVGLELKSGAGAPLECTSNFVVDFIWKSTSFDRMQLALRKFAVDDSSVSGY
IYRRLLGHEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLA
LHEQARALGSADSELRKLTRLKEEAGELSAADERRYRALRRAAERRLLDAADVVCTTCVG
AGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPW
PRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQ
RSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRL
NVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKL
VNAQNPGSHFMSTSMFDAREAMVPGSVYDRARPPRDPLAYVGHEHAASLHAPVPPAAFAA
HRPQQRAPPDATRSRRRPPRLSQEPLSQQPPLSLSQGASQPDFSQESSAPDCPSQPDGLL
SQDSTYQGGFRARCAQY
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcgtatggcccaagttctcaaacactcacattcttagaaaccgaagaa
gcagatctaatcggtgctgacacacaaggatctgagtttgaatttacagactttacatta
ccatctcagagccaaacacaagcatcacaacacgatcatggaataacttcatccaaccaa
attaatggactcggtcgtggagaccttcattcgaaagtatcaagtgtagctaatgcaatt
gcggaactacaattcgaagaggaggatgaagccttgtatagtagcaaggaactgccagaa
catgcttgcaagtattgtggcattcacgatcccgccacagttgttatgtgtaacatctgc
aacaagtggttttgcaatgggcgcggaaacacttctggatctcatatcattaatcatcta
gtgagagctaaacataaagaagcagcacttcatagagatggcccattgggagaaacatta
ttggaatgctactcatgtggggctcgtaatgtttttgttctcggttttataccagcaaaa
gccgactcagttgttgtccttctgtgccgacagccatgtgccgcccaaagctctcttaag
gatatgaactgggatcaagagcaatggaagccactaatttctgaccgtgcatttctgtct
tggcttgtaaaagtgccttctgaagctgaacaaatgagggcaagacaagtgactcctcaa
caaattggacgtcttgaagaactatggcgtgataatgtcgatgctactttccaagattta
gaaaaaccgggtgtagacgaggagccccatcaagtactcctgagatatgaggatggatat
caatatcagaatatatttggtcctctcgttaaactagaagctgattacgacaagaggctc
aaagagtcacaaacccaggaaggcatagaggtgcgttgggatgtgggtctcaataagaaa
actattgcatatttcaccctggccaaaacagatagtgacatgaaacttatgcatggagac
gaactgagattgagatatgttggtgagctacataaagcatggtctggtgttggccatgtc
attaaagttcctgataattatggtgacgacgtcggtttagaactgaagagtggggccgga
gcaccccttgaatgtacttccaactttgttgttgattttatatggaagagtacatcattt
gacagaatgcaactagctctacgtaaatttgcagtagacgattcctcagtctctgggtac
atctatcgtcgtctgctaggtcatgaggtagaagaggtattgttccgcgtacacctgccg
aaacacttcagcgcaccgaacttacccgatcttaacagatctcaggtgtatgcagtcaag
cacgcactccaacgtccattgtctctgatccaaggtcctccgggtactgggaaaaccgtt
acatctgcgaccattgtataccagctcgtacgccaaaacggtggtcctgtactcgtatgc
gctccgtccaacactgccgtagaccaactgactgagaaaatacatcgaaccggtctgaaa
gtcgttcgtctctgtgctaaatccagggaggctatggaatcttcagtttccttcttggcc
ttacacgaacaggcacgggccttgggctccgctgatagtgaacttcgcaagttaactagg
ctgaaggaggaggctggtgaattgtctgcggctgatgagaggaggtaccgtgcgctccgt
agagcggccgagagaagattgcttgacgcggccgatgtcgtatgtactacctgcgtcggt
gctggcgatcccagggttgcacggatgaggttccagtccatcctcatcgatgaaggcatg
cagtctacggaacctgagtgtatggtgcccgtagtgcttggagcgaggcaattaatcctc
gtcggtgaccattgtcagttaggtccagtggttatgtgcaaaaaagccgccaaagccggt
ctcagtcagagtctttttgaacggctcgtagttctaggcattcgccccttccgcttagaa
gtgcaatatcgtatgcacccagagctctcccgctttccgtcagacttcttttacgaagga
tcacttcagaatggagtaagtgcggaggagagacgattgcacaaaatcgatttcccatgg
ccaagacccgataggcctatgttcttttacgttactcagggtcaagaggaaatagctgga
tcgggaacatcgtacctaaatcgaacggaagccgctaatgttgaaaagttgacgactcgc
ttcttgaaagctggtgttcgtccagaacaaatcgggatcatcactccgtacgagggtcaa
aggtcatacctcgttcagcatatgcagtatcaaggcagtctgcacgctaagctatatcaa
gagatcgaagtcgccagtgtggacgctttccagggccgggaaaaagatatcataataatg
tcctgcgtccggtccaacgaacatcaaggaatcgggtttttgagcgatccgcgtcgcttg
aacgtggcattaacacgcgccaagtacggcttaattgtggtcgggaatccgaaagttctc
agcaaacagccgctgtggaaccacctgctagccttctacaaggagcgacgtgtgctaaca
gagggacctttgtctaatctgaaagagtcggcgatacagttcgcaaagccgaagaagttg
gtgaacgctcagaatcctggctcgcatttcatgtcgacgtcgatgttcgacgctcgcgag
gcgatggtcccgggatccgtgtacgatcgtgcccgtcctccacgcgacccgctcgcctac
gtcggccacgagcacgcggcgtcgcttcacgctcccgtcccgccggcagctttcgccgct
caccgtccgcagcaacgcgccccgccagacgcgacgcgttcccgccgtcggccgccgcgt
ctctcacaggagccgttgtctcaacagccgccgctgtcactgtcacagggagcgtcgcag
ccggacttcagccaggaatcgtccgccccggactgcccgtcgcagccggacgggttgctg
tcccaggactccacgtaccagggagggttccgcgcgcgctgtgcccagtactga
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