Dolosigranulum pigrum: FNV33_02700
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Entry
FNV33_02700 CDS
T06088
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dpm
Dolosigranulum pigrum
Pathway
dpm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dpm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FNV33_02700 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpm03400
]
FNV33_02700 (mfd)
Enzymes [BR:
dpm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FNV33_02700 (mfd)
DNA repair and recombination proteins [BR:
dpm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FNV33_02700 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
MFD_D3
PUMA
Motif
Other DBs
NCBI-ProteinID:
QDO91009
UniProt:
A0A516GHM3
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All DBs
Position
544463..547987
Genome browser
AA seq
1174 aa
AA seq
DB search
MSSLTDRLLSQPSVQEVLRALQPNTSHLLTGMVRSARGLLSQAMYQKQPQKIIWVTENTY
HAGQLATDLAGMVAEEDLYVFETNDVLHAELAVSSPEAQAERIRTLEFLSSDRPGIAIIP
LAGLRKLLPPVEAFQSLLFSVALGEEVELKQLTSHLVDMGYVKEQKVTKPGEFSVRGGII
DIYPITEAHPVRVELFGSEVDSLRSFDADTQRSIANLAEMTILPARDYMLLPQYAEQAAD
RFKTAYQKALEKADSDERIQRLRQSFESVQDSLEAGEQNREYIKFPDLLYPGKTSVLDYV
RGEAVLLVDEYPRVRENNAQLDTEEAEWVTGELQGGRLLPGQVFSQSAKDILAATSLPTL
YFSLFRKGMGSVTFDSIHHIHSRQAQKFFGQMKLIQTEMTGWQKKDTTVIVMGSDEERQG
EIHRTLQDFEIDAVISTIDQIQTGSIQVVAHTVREGFELIDDKLVVLTEQDLFNKIPKRR
ARQTKLSNAERLKNYNELSPGDYVVHVHHGIGEYVGMETMEIGGVNQDYLSVMYKNNSKL
FIPVTQLNLLQKYVASEGHTPKINKLGGTSWEKTKRKVGSQVEDIADDLIELYAERERQK
GYAYPADNAYQKEFEAAFPYSETDDQLRSAKEIKEDLQEAKPMDRLLVGDVGYGKTEVAL
RAIFKVVQEGKQAAFLVPTTVLAQQHYETMIERFVDFPVEIGILSRFKTQKEVKETISQL
KKGQLDVVVGTHRLLSKDIVFQDLGLLVVDEEQRFGVKHKERLKDMKTQVDVLTLTATPI
PRTLHMSMLGVRDLSVIETPPANRYPVQTYVMEMNSIVIREAIEREMARGGQIFFLHNRV
KTIERRMFELQELVPDARISCIHGQMTETELENRLFEFLSGEYDVIVTTTIIETGVDMPN
VNTLIVEDADHMGLSQLYQLRGRVGRSSRVAYAYFMHQPGKVLTEVSESRLQAIKDFTEL
GSGFKIAMRDLAIRGAGNLLGKQQHGFIDAVGFDLYSQMLEEAVERKQNNGKLKKTILEI
DVAINAYLPSDYIQDERQKIELYKRIRSLTGRDEYRELQEELIDRFGEYDQEVADLLQIG
LIKYFGERALIEKIARQDKTIQIDFSPEASQQLSVEWLFKALGDTTLRSDMKTEDQWQLT
FKLTKRTTKEDWLNNLLIFTEALANLRESAEKEA
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
gtgtcatcattaaccgatcgattattatctcagccgtctgtgcaagaggtattacgtgct
ttacaaccaaatacatcccatcttctaacagggatggtgcgctcagcacgaggcttatta
tctcaagcaatgtatcaaaaacaacctcagaaaatcatctgggtaacagaaaatacttac
catgctggtcaattagcgactgatttagctggaatggtggcggaagaagatctttatgta
tttgagacgaatgatgtattacatgcggagttggcagtgagttctccagaagcgcaggct
gagcgtattcgtactttggaatttttatcgtccgatagaccggggattgcgattattcca
ctggcggggttgcgtaagttgcttcccccggtggaggcatttcaatcgttattgtttagt
gtagcgttaggtgaagaggttgaacttaaacagctgacgagccatttggttgatatggga
tatgtgaaggaacaaaaagtgacaaagcccggcgagtttagtgtacgcggtgggattatt
gatatttatccgattacggaggctcacccggttcgagtggaactgtttggctcagaagtt
gattcgttgcgctccttcgatgcagatacgcaacggtcgattgctaatttagctgagatg
actattttaccagcgcgagattatatgttactgcctcaatatgccgagcaagcagctgat
cgtttcaagacagcttatcagaaggcgttagagaaggccgatagtgatgaaagaattcaa
cgtctgagacagtcttttgaatcggttcaagattcattggaggctggggagcagaatcgt
gagtatattaagtttccggatctattgtatccaggcaaaacaagtgtcctcgattatgta
cgcggagaagccgttctgttggtggatgaatatccgcgtgtgcgagaaaataatgcccag
ctagatacagaagaggcagaatgggtcactggagaactgcaaggtgggcgattgcttccg
ggacaagtcttttcacagtcagctaaggatattttagcggctacctcgcttccgacactt
tatttttctcttttccgtaaagggatgggaagtgtgacgttcgatagtattcatcatatt
cattcgcgacaagcgcagaagttctttggtcagatgaagttaatccagaccgaaatgaca
ggttggcagaagaaagacacgactgttattgtgatgggaagtgacgaagagcgccaaggt
gaaattcatcggacattacaggactttgagatagatgcagtgattagtacgattgatcag
attcagacggggagcattcaagttgttgctcatacggtacgagaaggatttgaattgatt
gatgataaactggttgtactgacggaacaagatctctttaataaaataccgaaacgtcgc
gcgcgtcagacgaagctatcgaatgcggaacgattgaagaattataatgaactgtcaccg
ggggattatgtggtgcatgttcatcatggtattggtgaatatgtgggcatggagaccatg
gaaatcggtggtgtgaatcaagattatctttccgtgatgtataagaacaactcgaagctg
ttcattcccgtcactcagcttaatttattacaaaaatatgttgcttcagaaggacataca
ccgaaaatcaataaattaggaggtacctcttgggagaagacgaagcgaaaagttggctct
caagtggaagatattgctgatgatttaatcgagctttatgcagaacgtgagcgccaaaaa
ggttatgcctatcctgctgataatgcttatcaaaaagaattcgaagctgcttttccttat
agtgaaacagacgatcaattaaggtcggctaaagaaataaaagaagacttacaagaagct
aaaccgatggatcgcttattagttggtgatgttggttatgggaagacagaagtggcttta
cgtgctattttcaaagtggttcaagaaggaaaacaagctgctttcctcgtgccgacaacc
gtcctcgctcagcaacattatgagacgatgatcgaacgttttgtcgatttcccagtagag
attggtattttaagccgattcaaaacccaaaaagaagtcaaagaaacgatctcacagttg
aaaaaaggccagctggatgttgtagtagggacacaccgcttgttgtcgaaagatattgtg
tttcaagatttgggtctgctggtggtggatgaagaacagcgcttcggggtgaagcataaa
gaacgtctaaaagatatgaaaacacaagtcgatgtcttgacactgacagcgactccgatt
cctcggacgttgcatatgtcgatgcttggggtgcgagatctctctgtaattgagacccct
ccagccaatcgttatccagtccaaacttatgtgatggaaatgaatagtatcgttattcgg
gaagcgattgagcgcgaaatggctcgtggaggtcagattttcttcttgcataatcgggtg
aagaccattgaacgccgtatgtttgaattgcaagaattagtgccagatgcccggattagt
tgcattcatggtcagatgacggagacagaattggagaatcgtttgtttgaatttttatct
ggcgaatatgatgtgattgtgacgacaacgattatcgagaccggtgttgacatgccgaat
gtgaatacattaattgtcgaagatgcggatcatatgggcttgtcgcaactgtatcaatta
cgtggacgggtagggcgtagtagtcgtgtggcctatgcgtactttatgcatcagcctgga
aaagttcttaccgaagtgagtgaaagccgtctacaagcgattaaagattttacggagtta
ggttcagggtttaagatcgcgatgcgtgacttagcaattcgtggggccggtaaccttcta
ggcaagcaacaacacgggtttatcgatgcggttggatttgacttgtattcacagatgttg
gaagaagctgttgaacgcaagcagaataatgggaagttgaagaaaacaatacttgaaatt
gatgttgccattaatgcttacttgccgtcagattatattcaagatgaacgccaaaaaatt
gaactctacaaacgaattcgctctctaaccggacgcgatgagtaccgtgaattacaagag
gaactgatcgatcgatttggagaatacgaccaagaagtagctgatttactccaaatcggg
ttaattaaatacttcggtgagcgtgcgttaatagaaaaaattgcacgtcaggataagacg
atccagattgatttttcaccagaagctagtcagcaattatcagtggaatggctgtttaag
gcgcttggtgatacgacgttacgttcggatatgaaaactgaagatcaatggcagctgacc
tttaaattaaccaaacgaacgacaaaagaagactggttgaataatttgctaatctttact
gaagcgttagctaatttacgagaatcagccgagaaggaggcataa
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