Dolosigranulum pigrum: FNV33_03410
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Entry
FNV33_03410 CDS
T06088
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
dpm
Dolosigranulum pigrum
Pathway
dpm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FNV33_03410 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpm03019
]
FNV33_03410 (rny)
Messenger RNA biogenesis [BR:
dpm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FNV33_03410 (rny)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
V-ATPase_G
KH_KhpA-B
KH_2
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
QDO91143
UniProt:
A0A328KIA6
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Position
716398..717960
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AA seq
520 aa
AA seq
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MGLLTAIFFAIVTLIIGLVAGIYFGNSSQVKKQEDARQTATLIVEDANKEAETLKKEALL
EAKEEIHAYRSEVEEDIKERRSELSRQENRLDQKEDNLDTKSLNLDKKENALHERENKLT
EEKAEIDSLKEEVEELVSKQEETLHEIAALSPEQARKEVLDQTEQELTRELAIMVKQYED
KMKNEADRRAKSILTEAIQRCAADQVSETTVSVIDLPNDDMKGRIIGRDGRNIRTIESLT
GMDLIIDDTPEAVVLSGYDPIRREIAKMALEKLISDGRIHPGRIEDAVEKSRKEMDERIR
EIGEEAMFELGIHSIHPDLIKIIGRLNFRTSYGQNVLNHSIEVAKLAGLMAAELGEDVTL
AKRAGLLHDLGKALDADVEGSHVEIGAQVAMKYQEPDVVVNTIASHHGDIEASSVIAGLV
EAADSISAARPGARSESLDSYLKRLENLESISNQFDGVKESYAIQAGRELRILVKPDEVG
DSEAASLARNVRKRIESTMDYPGHIKVTVIRETRSIDYAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
gtgggtttactaactgcaatcttcttcgctatcgttactttaatcattggactagttgcc
gggatatattttggtaattcgtcccaagtgaaaaaacaagaagacgctagacaaacagca
actttgattgtggaagatgctaataaagaagcagaaaccttgaagaaagaagcgttgttg
gaggcaaaagaagagattcatgcctaccgatctgaagttgaagaagatataaaagaaaga
cgctcggaactatcaagacaagagaaccgattagatcaaaaagaagacaacttagatact
aaatcactcaatcttgataagaaagaaaatgcccttcatgagcgtgaaaacaaattaact
gaagaaaaagcagaaattgattcacttaaggaagaagttgaagaattagtatcgaaacag
gaagaaactctgcatgaaattgcagcgttatctcctgaacaagcaagaaaagaagttctc
gatcagacagaacaagagttgactcgagaattggctataatggtcaagcaatacgaggat
aagatgaagaatgaagcggaccgccgtgcgaaatctattctaacagaagccattcagcgg
tgtgcagccgatcaagtatcagagacaactgttagtgtgattgacttaccgaacgatgat
atgaaaggtcgtattatcggacgggatggacgtaatattcgcacaatcgaaagtcttacg
gggatggatcttattattgatgacaccccagaagcagttgttttaagtggttatgatcca
attcgtcgcgaaattgcaaaaatggccttggagaaattaatctcagatggtcgtattcat
ccaggacgtattgaagatgcggttgaaaaatcgcgcaaagaaatggatgaacgtattcgt
gaaattggagaagaagcgatgttcgagttaggtattcattccatccacccagatttaatt
aagattattggccgattgaatttccgtacaagttatggacagaatgttttaaatcattca
attgaagtcgctaaattagctgggctgatggcagctgagttaggtgaagatgtgacctta
gcgaagcgtgcgggcttacttcacgatctagggaaagcactagatgctgatgtagaaggt
tctcatgttgaaattggagcgcaagtcgcgatgaaataccaagagccagatgttgtggta
aacacaatagcttcacaccatggggatatagaagctagttctgttattgcgggtctagta
gaagcagctgactcaatctcagcagctcgtccaggtgctagaagtgagtcgctcgatagt
tacttgaagcgccttgaaaacttagagagtatttcgaatcagttcgatggagttaaagaa
agttatgcgattcaagccgggcgtgagttacgaatcttagtgaagcctgatgaagttggc
gacagcgaagcagctagcttagctcgcaatgtacgtaagagaatagaaagtacaatggat
tatccaggacatattaaagtaacggttatacgcgaaacaagatcaattgattacgcaaaa
taa
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