Dolosigranulum pigrum: FNV33_04755
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Entry
FNV33_04755 CDS
T06088
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
dpm
Dolosigranulum pigrum
Brite
KEGG Orthology (KO) [BR:
dpm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpm03019
]
FNV33_04755
03009 Ribosome biogenesis [BR:
dpm03009
]
FNV33_04755
Enzymes [BR:
dpm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FNV33_04755
Messenger RNA biogenesis [BR:
dpm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FNV33_04755
Ribosome biogenesis [BR:
dpm03009
]
Prokaryotic type
rRNA helicases
FNV33_04755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_30
Cas3-like_C_2
DUF3638
P-loop_SecA
AAA_22
SMC_N
AAA_19
Flavi_DEAD
DUF6506
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QDO91401
UniProt:
A0A1S8KM88
LinkDB
All DBs
Position
1020182..1021489
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AA seq
435 aa
AA seq
DB search
MTDHFKQYNFQPFIYEALDAIDFYEPTAIQAKVIPEMTKNRDLVVQSQTGSGKTHAFLLP
LINQIEADKREVQVVITAPSRELAEQLYRMAEQVAGFADPEIIVGRFIGGRDKEKSLDKL
EHRQPHIAIGTPGRMLDMIQSNALDIHKAPFMVVDEADMTLDMGFLNVVDQIASRIPKES
QLFVFSATIPEKLQPFFRKYMNNPKFIESESQSLLSESVDNWLISTRSKNRIDLIHEVLT
LGQPYLALIFANTKEKVDEIAKQLVARGLNCCVLHGGLSARERRRVMRQIRNLEYQYVVA
TDLASRGIDIDGVSHVVNAEIPRELDFFIHRVGRTGRNNLPGTAITFYHPDESPAIDILE
DKGIEFQPKTIKNGRVVDVKDRRNRQQRKHKQQKTYDPEIAGMVKKAKKKIKPGYKKKIN
EFKKRKARRQRRKKK
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgacagatcattttaaacaatataattttcaaccatttatttatgaagcattagacgca
attgatttctatgaaccgaccgcaatacaggcaaaagttattcctgaaatgaccaaaaac
cgtgacttagttgtgcaatcacagaccggttcaggcaagacgcatgcgttcttgttgcca
ttaatcaatcaaattgaggcagacaagagagaagtacaagttgtcattactgcacctagt
cgtgaactagctgaacagctctaccggatggcggaacaagtggctggctttgctgatccg
gaaattattgtcggacgctttatcggtggacgagataaggagaaatcattagataagtta
gagcaccgccaaccgcatattgcaattggaacaccgggccggatgttggatatgatccaa
tccaatgcattagacattcataaagctccttttatggtagttgatgaagcagatatgaca
ttggatatgggctttttaaatgtggttgaccaaattgcgagccgcattcccaaagagagt
caactatttgtattttctgcaaccattccagagaaattacaaccatttttccgtaaatat
atgaataatccgaaatttattgaatcagagagtcaatccttattatcagagtccgttgat
aattggttgatttcaacgcgtagcaagaacaggatcgatttaattcatgaagtattaaca
ttagggcaaccttacttagcgttgatttttgcgaatacaaaggaaaaagttgatgagatt
gccaagcaattagtagcgcgtggattgaattgttgcgtgctgcatgggggattgagcgcc
cgtgaacgtcgccgtgtcatgcgccaaattagaaacttagagtatcaatatgtagtggct
actgatttagcatcgcgcggtattgatattgatggcgtatcccatgtggtcaatgcggaa
attccacgtgagttagatttcttcattcaccgagtgggacgaactggacgcaacaattta
ccgggaacagcaattaccttctaccatccagatgaatcaccagccatcgatatactagaa
gataaaggcattgaattccagccaaaaacgattaaaaacggacgagtggtggatgtaaaa
gatcgtcgcaaccgtcaacagcgtaaacacaaacaacaaaaaacatatgatccagaaatt
gccggcatggtgaaaaaagcgaagaaaaaaattaagccaggctataagaaaaaaatcaat
gaatttaaaaaacgaaaagcacgtcgacagcgaagaaagaaaaaataa
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