Dialister pneumosintes: BCB69_03295
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Entry
BCB69_03295 CDS
T04459
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dpn
Dialister pneumosintes
Pathway
dpn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BCB69_03295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpn03019
]
BCB69_03295
03016 Transfer RNA biogenesis [BR:
dpn03016
]
BCB69_03295
Enzymes [BR:
dpn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BCB69_03295
Messenger RNA biogenesis [BR:
dpn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BCB69_03295
Transfer RNA biogenesis [BR:
dpn03016
]
Prokaryotic type
tRNA degradation factors
BCB69_03295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
OB_Dis3
S1_RRP5
EDC4_C
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AOH39076
UniProt:
A0A1B3WDM8
LinkDB
All DBs
Position
complement(665586..667616)
Genome browser
AA seq
676 aa
AA seq
DB search
MLEKLLTYKPGTILQGTYKAYGNRFGFVLTDEKYEDIYIAEKDAGSAVNNDIVEVEIMKS
KTGRHSTEGRIIHVITRANTTVVGTYEMTRYGGEVIPVDEKINMLIEIPSGQECQAVTGA
RVVVEVTKWPGRYTNAEGKIIEIIGYKGDKGLDIDIIVAQHKIPHVFNTDVMKEAAALCQ
DIFLEKNMADFRVQELVTIDGSDSKDLDDAIYCELKDNGHYRLGVHIADVSRYVKPRSAL
DKEAYQRGNSVYLADRVIPMLPFELSNDLCSLNEGKERYAISCIMDVDPNGIVTLEKITP
SIIKVARRCTYPEINQAFDEGIVSDGLQKFLPMLTVFKECTHLLRKQREGRGALAFDFPE
YKVALDEKGAPLRIIKRERGEAERMIEDAMIAANETVASFITRENFTAVYRVHDQPNQEK
LDILRQMINVLGINIKIPADVKPKDMQQLLEFVKGKDIAAVIEVMALRSLPQACYSTENV
GHFGIASSCYTHFTSPIRRYSDLLVHRLIKQLLYKKLRKSEQEKQMEFLKKAVDHISMTE
QNATDAERETTELKMTEYMEPFVGEPFDAHITGVTKFGVFVGLENGVEGLVHISTMDDDE
YVYNEESMQLTGRFNGVQYSLGMPVRVTLIKADKDKHEIDFIMGEIHSPLQLEKSNRKKK
KPHSKKVKRRYIRIRR
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgctagaaaaattattaacatataaaccgggaaccattcttcaaggtacttataaagca
tatggaaatcgttttggtttcgtattgacagatgaaaaatatgaagatatttatattgca
gaaaaagatgccggtagtgctgttaataatgatatcgttgaagtagaaattatgaaaagt
aaaaccggtcgtcatagtacggaaggtcgaattatacatgtgattacacgtgctaatacg
actgtggtaggtacgtatgaaatgacccgatatggtggagaagtgattcctgttgatgaa
aaaattaatatgcttatcgaaattccgtccgggcaagaatgtcaggcagtaaccggtgct
agggttgtagttgaagtaactaagtggccgggaagatatactaatgcggaaggtaaaatc
atagaaattattggttacaaaggtgataaagggctggatattgacattattgtagctcag
cataaaataccacatgtgtttaataccgatgttatgaaagaggctgctgcattgtgtcaa
gatatatttttagaaaaaaatatggcagattttagagtacaggaattagtgactattgac
ggttctgactctaaagatttagatgatgctatttattgtgaattaaaagataatggacat
tatagactaggtgtacatattgcagatgtaagcagatatgtaaaaccaaggtctgcttta
gataaagaggcctatcagcgaggaaatagtgtatatttagcagatcgagttattcctatg
ttaccgtttgaactttctaatgatttgtgtagtttaaatgaaggaaaagaacgttatgcc
atatcatgtatcatggatgtagatccgaatggtatagtaactttagaaaaaattactcct
tctattataaaagtggcacgtcgctgcacctaccctgaaattaatcaagcttttgatgag
gggattgtgtctgacgggttacaaaaatttttacctatgttaacagtatttaaagaatgt
actcacttacttcgtaaacaaagggaaggtaggggggcacttgcttttgattttcctgaa
tataaagtagctcttgatgaaaaaggggctcctttacgtattataaagagagaacgtgga
gaagctgaacgaatgattgaagatgcaatgattgcagctaatgaaacggtagcatccttt
attaccagagaaaattttaccgctgtatatcgagtacatgatcaaccgaatcaagaaaag
ttagatatattgagacagatgattaatgttttaggtataaatatcaagattcctgcagat
gtaaaacctaaagatatgcaacagttattagagtttgttaagggaaaagatattgcagct
gttatagaagtgatggcattacgctcacttccccaagcttgttatagtacagaaaatgta
ggtcattttggcattgcatcttcttgttatacacattttacatctcctattcgtcgttat
tctgatttattggtacatcgattaattaaacaattattatataaaaaattaagaaaatca
gaacaagaaaagcaaatggaatttttaaagaaagctgtagatcatatatcgatgaccgag
cagaatgctacagatgcagaacgcgaaactaccgagttaaagatgacagaatacatggag
ccttttgtaggagaaccatttgatgcacatattaccggtgttactaaatttggtgttttt
gtagggttggaaaatggtgtagaaggacttgtacatatatcaacgatggatgatgatgag
tatgtatataatgaagagtctatgcaactaaccgggcgttttaatggtgttcaatatagc
ttaggaatgcctgtacgtgttactttgataaaagcagataaagataaacatgaaattgat
tttattatgggggaaatacattcacccttacagttagagaaaagtaatagaaaaaagaag
aaaccccattctaaaaaagtaaagagaagatatattagaataagaaggtaa
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