Drosophila pseudoobscura: 4803957
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Entry
4803957 CDS
T01032
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1
KO
K14401
cleavage and polyadenylation specificity factor subunit 1
Organism
dpo
Drosophila pseudoobscura
Pathway
dpo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dpo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
4803957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpo03021
]
4803957
03019 Messenger RNA biogenesis [BR:
dpo03019
]
4803957
Transcription machinery [BR:
dpo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
4803957
Messenger RNA biogenesis [BR:
dpo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
4803957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Beta-prop_WDR35_2nd
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
4803957
NCBI-ProteinID:
XP_001360595
UniProt:
A0A6I8UTM8
LinkDB
All DBs
Position
3:complement(8755885..8760715)
Genome browser
AA seq
1459 aa
AA seq
DB search
MFSMCKQTHPATSVEFAISCRFFNNLEENLVVAGANMLKVYRISPNVEAGQRQKLNPNEM
RIAPKMRLECLATYFLYGNVMSLQCVSLAGAMQDALLVSFKDAKLSVLQHDPDTYALKTL
SLHYFEEEDIRGGWTGRYFVPVVRVDPDARCAVMLVYGKRLVVLPFRKDNSLDEIELTDV
KPFKKAPTAMVSRTPIMASYLITLKELDEKIDNVLDIQFLHGYYEPTLLILYEPVRTCPG
RIKVRSDTCVLVAISLNIQQRVHPIIWTVNSLPFDCFQVYPIQKPIGGCLVMTVNAVIYL
NQSVPPYGVSLNSSADNSTSFPLKPQDGVRISLDCANFAFIDVDKLVISLRTGELYVLTL
CVDSMRTVRNFHFHKAAASVLTSCICVCHSEYIFLGSRLGNSLLLHFTEEDQSTVITLDV
DAEQQAEQQQQKQQRVQEDQDIEEVYDVDQIELAPPQAKSRRIEDEELEVYGSGAKASVL
QLRKFIFEVCDSLINVAPINYMCAGERVEFEEDGTTLRPHAENLHDLKIELVAATGHSKN
GALSVFVNCINPQIITSFELDGCLDVWTVFDDATKKTSRHDQHDFMLLSQSNSTLVLQTG
QEINEIENTGFTVNQATIFVGNLGQQRFIVQVTTRHVRLLQGTRLIQNVPIDVGSPVVQV
AIADPYVCLRMLNGQVITLALRETRGSPRLAINKHTITSSPAVVAIAAYKDLSGLFTVKS
DDVLNLTGGSGSGFGHSFGGYMKAEPNMKVEDEEDLLYGDAGNAFKINSMAVLAQQSKQK
NSDWWRRLLVQAKPSYWLVVSRKSGTLEIYSMPDMKLVYHINDVGNGAMVLSDALEFVSL
SSSTQENSKVGIVQSCMPQHANSPLPLELSLVGLGLNGERPVLMVRTRVELLIYQVFRYP
KGNLKIRFRKLEQLNLLDQQPSHIELEENDEEEELESYNMQPKYVQKLRPFSNVGGLAGI
MVCGVNPCFVFLTARGELRIHRLQGNGDVRSFAAFNNVNIPNGFLYFDTTFELKISVLPS
YLSYDSVWPVRKVPLRCTPRQLVYHRENRVYCLITQTEEPMTKYYRFNGEDKELSEESRG
ERFIYPNGSQFEMVLISPETWEIVPDASIRFEPWEHVTAFKIVKLSYEGTRSGLKEYLCI
GTNFNYSEDITSRGNIHIYDIIEVVPEPGKPMTKFKLKEVFKKEQKGPVSAISDVLGFLV
TGLGQKIYIWQLRDGDLIGVAFIDTNIYVHQIITVKSLIFIADVYKSISLLRFQEEHRTL
SLASRDFNPLEVYGIEFMVDNSNLGFLVTDAERNLIVYMYQPEARESLGGQKLIRKADYH
LGQVVNTMFRVQCHQRGVHQRQPFLYENKHFVVYGTLDGGLGYCLPLPEKVYRRFLMLQN
VLLSYQDHLCGLNPKEFRTLKSFKKQGLNPSRCIIDGDLIWSYRLLPNSDRNEVAKKIGT
RTEEILSDLLEIERLSGVF
NT seq
4380 nt
NT seq
+upstream
nt +downstream
nt
atgttctccatgtgcaagcaaacccaccccgccacgtcggtggagttcgccatctcgtgc
cggttcttcaacaacctcgaggagaacctcgttgtggccggcgccaacatgctgaaggtg
taccgcatctcgccgaatgtggaggcggggcagcgccagaagctcaatcccaacgagatg
cgcattgccccgaagatgcggctcgagtgcctggccacatacttcctctacggcaatgtg
atgtctctgcagtgcgtctccctggcgggcgcaatgcaggatgctctcctggttagcttc
aaggatgcgaagctgtcggtgctgcagcatgatccggacacatacgccctgaagacacta
tcgctgcactacttcgaggaggaggacatccggggtggctggacgggtcgctactttgtg
ccggtggtgcgcgtggacccggacgcccgctgtgctgtcatgctggtctacggcaaacga
ctggtggtgctgcccttccgcaaggacaacagcctggacgagatcgagctgacggacgtg
aagcccttcaagaaggcacccacagcaatggtctcgaggacgcccatcatggcgtcctac
ttgataaccctcaaagaactggacgagaagattgacaacgtcctggatatacagttcctg
cacggctactacgaacctacgctcctgatcctctacgaaccggtgcgcacctgcccaggc
cgcataaaagtacgctcggacacctgcgtcttggtggccatctccctgaacattcagcag
cgcgtccatccgattatatggacagtgaatagtctgcccttcgactgcttccaggtttat
ccgattcagaagcccattggaggctgtctggtgatgactgtgaatgccgtgatctacctc
aaccagagtgtaccgccgtatggcgtcagcctgaacagctcggcggacaacagcaccagc
ttccccctcaagccccaggatggtgtgcggataagcctggattgcgccaatttcgccttc
attgatgtggacaaactggttatctcgctgcgcacgggcgagctctatgtgttgactctc
tgcgtggactccatgcggactgtgaggaatttccactttcacaaagcggccgccagtgtc
ctgaccagctgcatttgcgtctgccactcggagtacattttcctgggttctcggttgggc
aattccctgttgctgcacttcaccgaagaggatcagagcacggtcatcacgctggatgtg
gatgcggaacaacaagcagagcagcagcaacagaagcagcagcgggtgcaggaggatcag
gacatcgaggaggtttacgatgtggaccaaattgaattggctccccctcaagccaagtcc
cgacggatagaagacgaggaactggaggtctatggctcgggggccaaggcttcggttctc
cagctgcgcaaattcatcttcgaggtctgcgacagcctcatcaatgtggcgcccatcaat
tacatgtgcgccggcgagcgagtggagttcgaggaggatgggaccacgctgcgaccgcat
gcggagaacctgcatgacctgaagatcgagctggtggccgccacagggcacagtaaaaac
ggtgccctctccgtctttgtgaactgcatcaatccgcagatcatcaccagcttcgagctg
gacggctgcctggacgtgtggacggtgttcgacgacgccacaaagaagacctcgcggcac
gatcagcacgatttcatgctgctctcgcagagcaactccaccctggtcctgcagaccggg
caggagatcaatgagattgagaataccggattcacggtgaatcaggccaccatatttgtg
ggcaatctcggccagcagcggttcattgttcaggttaccacacgccatgtgcgtcttctg
cagggcactcgcctcatccagaacgtgcccatcgatgtgggctcgccggtggtgcaggtg
gccatagccgatccctatgtgtgcctgcgtatgctgaacggccaggtgatcacactggca
ctgcgcgagacgcgcggctcgccccgactggctatcaacaagcacacgatcaccagctcg
cccgccgtcgtggccatcgccgcgtacaaggatctgtcgggtcttttcacggtcaagtcg
gacgatgtgctcaatctgacggggggctcgggcagcggctttggccacagcttcgggggc
tacatgaaggcggaacccaacatgaaggtggaggatgaggaggacctgctgtacggcgat
gccgggaatgccttcaaaatcaacagcatggcggtcctggcccagcaatcgaagcagaag
aactcggactggtggcgccgcctcctggtgcaggcaaagcccagctactggctggtggta
tcccgcaagagtggaaccctcgagatctactcgatgccagatatgaagctcgtctaccac
atcaatgatgtgggcaacggggccatggtcctctcggatgccctggagttcgtttcgctt
tcatccagcacgcaggagaactccaaggtgggcattgtgcagtcctgtatgccgcagcac
gccaactccccgctgccccttgagctgagtctggtggggctcgggctcaatggagagcgg
cccgtgctgatggtgcgcacccgcgtggagctgctcatttatcaggtgttcaggtatccc
aagggcaacctgaagatccgcttccgcaagctggagcagctgaatctgctggatcagcag
ccctcgcacatagagctcgaggagaacgacgaagaagaggagctggagtcctacaacatg
caaccgaagtacgtccaaaagctgaggcccttctccaacgttggaggtttggctgggatc
atggtctgtggcgtgaacccctgctttgtcttccttaccgcccgcggcgaactccgcatc
caccgcctgcagggcaacggcgacgtccgcagcttcgctgccttcaacaacgtgaacata
cccaatggattcctgtactttgacaccaccttcgagctgaagatctccgtgctgcccagc
tacctgagctacgactccgtctggcccgtgcgcaaggtgccgctgcggtgcacgccccgt
cagctggtgtaccaccgcgagaatcgggtctactgcctgatcacgcagacggaggagccg
atgaccaagtactaccgcttcaacggggaggacaaggagctgtccgaggagagccgcggc
gagcggttcatctatccgaatggctcgcagttcgagatggttctcatctcgcccgagacc
tgggagattgtgccggacgcctccattcgcttcgagccgtgggagcatgtgacggccttc
aagatcgtgaagctgtcgtacgagggcacgcgatcgggtctcaaggagtacctctgcatc
ggcaccaacttcaactacagcgaggacatcaccagccgcggcaacatccacatctacgac
atcatcgaggtggtgcccgagccgggcaagcccatgaccaagttcaagctaaaggaggtc
ttcaagaaggagcagaagggccccgtctcggccatatcggatgtgctgggcttcctggtc
accgggctgggccagaagatctacatctggcagctgcgagatggcgatctcatcggcgtg
gccttcatcgacaccaacatctatgtccaccagatcatcaccgtcaagtcgctgatcttc
atagcggacgtgtacaagtcgatcagtctgctgcgcttccaggaggagcaccgcaccctc
tcgctggcctcgcgcgacttcaatcccctcgaggtgtatggcatcgagtttatggtggac
aacagcaatctgggcttcctggtgacggacgcagaacgcaacctgattgtctacatgtat
cagccggaggccagggaatctctcggcggccaaaagctcatccgcaaggcagactaccat
ctggggcaggtggtgaataccatgttccgggtgcaatgccatcagcggggcgtgcaccag
cggcagcccttcctctacgagaacaaacactttgtcgtctatggcaccttggatgggggt
cttggctactgtctgccgcttccggagaaggtctaccgccgcttccttatgctgcagaac
gtcctgctctcgtaccaggaccacttgtgcggcctcaatcccaaagagttccgcacgcta
aagtcgttcaaaaagcagggcctcaacccctcgcgttgcatcatcgatggcgacctgatc
tggtcctatcgcctgctccccaactccgatcgcaatgaggtggccaagaagattggcacg
cggaccgaggagattctgtccgatctgctggagatcgaacgcctgtctggtgttttctag
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integrated database retrieval system
