Drosophila pseudoobscura: 4805169
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Entry
4805169 CDS
T01032
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dpo
Drosophila pseudoobscura
Pathway
dpo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4805169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpo03019
]
4805169
03041 Spliceosome [BR:
dpo03041
]
4805169
Messenger RNA biogenesis [BR:
dpo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
4805169
Spliceosome [BR:
dpo03041
]
Complex B
Other components
Prp19-related factors
4805169
Complex C
4805169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
Mad3_BUB1_I
TPR_12
TPR_15
TPR_8
PPR
RPN7
TPR_10
ARM_TT21
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
4805169
NCBI-ProteinID:
XP_001361616
UniProt:
A0A6I8UVM4
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All DBs
Position
3:complement(18360892..18363867)
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AA seq
884 aa
AA seq
DB search
MVAKTGKTSNAELNFEEEDVPYEEEILRNAYSVKHWLRYIDHKAKAPNNGVNLVYERALK
ELPGSYKIWYNYLRTRRKQVRGKIPTDPMYEQVNNTFERALVFMHKMPRIWIDYGVFMTT
QCKVTRTRHVFDRALRALPITQHGRIWPLFLKFVQRFDMPETALRVYRRYLKLFPEDAEE
YVEYLQQVEKLDEAAQQLADIVDNEHFVSKHGKSNHQLWNELCDLISKNPHKVHSLNVDA
IIRGGLRRYTDQLGHLWNSLADYYVRSGLFDRARDIYEEAIQTVTTVRDFTQVFDEYAQF
EELSLNKRMEEVAKNEEATEEDDIDVELRLSRFEYLMERRLLLLNSVLLRQNPHNVHEWH
KRVNLYEDKPTEIINTYTEAVQTVQPKLAVGKLHTLWVEFAKFYESNGQVEDARVVFERG
TEVEYVKVEDLAAVWCEWAEMELRQQQFEAALKLMQRATAMPKRKVAYHDDSETVQSRLH
RSLKVWSMYADLEESFGTFKTCKAVYERIIDLKICTPQVIINYGMFLEEHNYFEEAYRAY
EKGIALFKWPNVYDIWNSYLSKFLARYGGTKLERARDLFEQCLDQCPAEHAKYFYLLYAK
LEEEHGLARHAMSVYDRATSAVKEEEMFDMYNIFVKKAAEIYGLPRTREIYEKAIEALPE
QHMRHMCVKFAELETKLGEVDRARAIYAHCSQVCDPRITADFWQTWKEFEVRHGNEDTMR
EMLRIKRSIQATYNTQVNMMAAQFVNTNTNGVAADAGAGSGPDAMRLLEEKARQAAAEAK
QKPAEKAASNITFVRGETQGGAKGKENTVVNPDEIDIGDSEDDDDDEEEEPQQPSGDQAE
AGQATTKTDDEGLIMKKLRFEQKAIPAKVFGSLKPTNQSDSDEG
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atggtggcaaaaaccggcaaaacctcaaatgcagaactcaattttgaagaggaagatgtg
ccctatgaggaggaaattctgaggaatgcctactccgtgaagcactggcttcgctacata
gatcacaaggccaaggcgcccaataatggtgtgaatctggtgtacgagcgcgccctgaag
gagctgcccggcagctacaagatttggtacaactatctacgaacgcgaaggaagcaggtt
cggggcaagatacccacagatcccatgtacgagcaggtgaacaacacgttcgagcgggcc
ctcgtcttcatgcacaagatgccgcgcatctggatcgactatggcgtcttcatgaccacc
caatgcaaggtgactcgcacgcggcacgtcttcgaccgggcgctgagggcactgcccatc
acacagcacggcaggatctggccgctgttcctgaagttcgtgcaacgcttcgacatgccc
gagacggcgctgagggtgtatagacgctatctgaagctgtttccggaggatgccgaggag
tatgtggagtacctgcagcaggtggagaagctggacgaggcggcccagcagctggccgac
atagtcgacaacgagcatttcgtgtcgaagcacggcaagtcaaaccaccagctgtggaac
gagctttgcgacctcatctcgaagaacccgcacaaggtgcactccctgaatgtggacgca
atcatcagaggcggcctgcggcggtacacagatcagctcggacacctgtggaactccctg
gccgactactatgtgcgctcggggctgttcgaccgggccagggacatctacgaggaggcc
attcaaacggtgaccacagtgcgggacttcacccaagtttttgacgagtacgcgcagttc
gaggagctgtcgttgaacaagcgcatggaggaggtggccaagaacgaggaggccaccgag
gaggacgacatcgatgtggagctgcgcctgtcgcgcttcgaatacctcatggagaggcgt
ctgctgctgctgaacagtgtcctgctgcgccagaatccgcacaacgttcacgagtggcac
aagcgggtcaacctgtacgaggacaagcccacggagatcatcaacacctacacagaggcc
gtgcagacggtccagcccaagctggcggtgggaaagctgcacaccctctgggtggagttt
gccaagttctacgagtccaatggccaggtggaggacgcccgcgtggtcttcgagcggggc
accgaggtggagtacgtcaaggtggaggatctggccgccgtgtggtgcgagtgggcggag
atggagctgcgccagcagcagttcgaggcagcccttaagctgatgcaacgtgccacggcc
atgcccaagcggaaggtggcgtatcacgacgactcggagacagtgcagtcgcgcctccac
agatccctgaaggtgtggtccatgtacgccgatctggaggagtcctttggcaccttcaag
acctgcaaggccgtctacgagcgcatcatcgacctgaagatctgcacgccgcaggtgatc
atcaactatggcatgttcctcgaggagcacaactacttcgaggaggcctatcgggcctac
gagaagggcattgccctgtttaagtggccgaatgtgtacgacatctggaactcgtatctg
agcaagttcctcgcgcgctacgggggcacaaagctggagcgggcccgagatctcttcgaa
cagtgcctggatcagtgtcccgccgagcatgccaagtacttttacctgctctacgcgaag
ctggaggaggagcacggcctggcccggcatgccatgtccgtctacgatcgcgccacgtcc
gccgtcaaggaagaggagatgttcgacatgtacaacatattcgtgaagaaggccgccgag
atctacggcctgccacgcaccagggagatctacgagaaggccatcgaggccctgcccgag
cagcatatgcgccacatgtgcgtcaaattcgccgagctggagacgaagctgggcgaggtg
gatcgagccagagccatctacgcccattgctcacaggtgtgcgatccccgcatcacggct
gacttctggcagacctggaaggagttcgaggtgcgtcatggcaacgaggatacgatgcgt
gaaatgctgcggatcaagcgctccattcaggccacctacaacactcaggtcaacatgatg
gctgcccagtttgtcaacacgaacacgaatggtgtggctgccgatgctggtgctggctcc
ggaccggatgccatgcggctgctcgaggagaaggcccgccaggcggcggccgaggccaag
cagaagcccgccgagaaggctgcctccaatatcacgtttgtgcgtggcgagacccagggc
ggggccaagggcaaggaaaatacagtcgtcaatccggatgagattgatattggcgacagc
gaggacgacgacgacgatgaggaggaggagccgcagcagccgagtggagaccaggccgag
gcaggccaggccacaaccaaaaccgatgacgagggcctcatcatgaagaaactgcgcttc
gaacaaaaggccataccggccaaggtctttggcagcctcaagccgacaaatcaatccgat
tccgatgagggataa
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