Drosophila pseudoobscura: 4805475
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Entry
4805475 CDS
T01032
Name
(RefSeq) exosome complex exonuclease RRP42
KO
K12589
exosome complex component RRP42
Organism
dpo
Drosophila pseudoobscura
Pathway
dpo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4805475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpo03019
]
4805475
Messenger RNA biogenesis [BR:
dpo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
4805475
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
4805475
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
4805475
NCBI-ProteinID:
XP_001361870
UniProt:
A0A6I8UWW6
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All DBs
Position
3:21044526..21045744
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AA seq
296 aa
AA seq
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MAYVALSEAEKTFILHGVEEDFRCDGRSRRDYRPMELETGLVSNASGSARLRLANTDILV
GIKTEIDVPDPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELVLALENAYESPLAFD
YRTLCLIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALHNTKLPQVTASLLDAGVTDL
IISDNPYDCTRLTIDTVPLLVTVCKIGDYCLVDPSAEEEACSTVSIVVSVSMRNGEAFLS
GSHMTGGGAMHRDTMRNCLNLGLSIGEQLNTLLAKVLKQEEERVGPKRPKTVGFLK
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacgttgcacttagcgaagccgagaaaacgtttatattgcatggcgtagaggag
gattttcgctgcgatgggcggtctcgtcgggattaccggcccatggagctggagactggg
ctggtgagcaacgcgagtggatcagctcgtctccgcttagccaacacggacatcctcgtg
ggcatcaagacagaaatcgatgtgcccgatcccttgactccggagttcggtaaactcgag
ttctttgtggattgctctgctaatgccacgccagagtttgagggtcgcggcggctcagac
ctggcccaggagctagtgctcgctctggaaaatgcctacgaatcccctttagcctttgac
tatcgcacattgtgccttataccgggtcagcagtgctggaagctctatattgacatcttg
atactcgagtgcggtggaaatcttcacgacgccgtttccctggccgccaaggcagcgttg
cacaacacaaaactgccgcaagtaactgcctccttattagatgccggcgtcacggatctc
attatatcagacaatccgtacgactgcacacgactaaccattgatacggttcccctgctg
gtcactgtgtgcaaaatcggcgactattgtcttgttgatccctcagcggaggaggaggct
tgcagcactgtcagcatagttgtatccgtatcgatgcggaatggagaagccttcctttcc
ggctcccacatgactggcggcggcgctatgcacagagataccatgcgcaattgcctgaat
ctcggtctgtcgattggcgaacaactgaacacgctgctcgcaaaggtgctgaagcaggag
gaagagcgcgtgggacctaagcggcccaagacggttggatttcttaaataa
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