Drosophila pseudoobscura: 4813691
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Entry
4813691 CDS
T01032
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
dpo
Drosophila pseudoobscura
Pathway
dpo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dpo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
4813691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpo03400
]
4813691
DNA repair and recombination proteins [BR:
dpo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
4813691
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
4813691
NCBI-ProteinID:
XP_001353167
UniProt:
A0A6I8UC90
LinkDB
All DBs
Position
X:43083094..43087710
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AA seq
1189 aa
AA seq
DB search
MSKKLNTSVGGTPTNTLFNYFTKSPAVDKKKLVPSVKAESTPTDRTDSEKENLNNGKNLE
VKKETETKPSAKRKLPISTPSDEEELGGRRKRKRIVLPESESEDEMEETKSEDDFSGDES
DYEPDGKDDAASEESESGDDEGGEPMDDEESEDDPTPKKSRNKDKNHNNNNNEPVGQKVK
LAEGSTFQEKLKNIQSNVKQDAAYDEIVTTSSSLDEPVVWPHQKLEFLQPDKIKDKEGRR
PDHPDYDKSTLHVPEKFLNNLSPGVRQWWVLKSNNFDCVLFFKVGKFYELYHGDADVGVN
ELGFTYMRGEFAHSGFPEISFDKMSTILIDRGYKVARVEQTETPDMVTERCKRIKSTKFD
KVVAREICQITNRGTQVFGSQCKIGPNHQPNYMLALVEQDEGTWSRFGICFIDTSIGDFH
LGEFEDDKNCSRLLTLLSHHMPVLLLSEKSALSLRTQQVVRTVLGGILREQLPSNGAHVC
NAEKTLKLLAERYYAGNGSEDNWPLVLRTMQSDSDHLGLTPSDNYKLALKALGQCVYFIN
KCLLEPKVLPMARYQMYVPPDQLAEAKPAVVSALRRSHMVLDATTLSNLRIIGEEHTLQS
TLDHCCTKFGKRLLHHWLCAPSCDIEILKERQAAIGELLRLPSELQEMRALLAPMPDFER
NLAQIHLFGNKQVKQTGHPDSRAILFEEKIYNKQKLVGFMAVLKGFNALTKLPLMFQQCE
TPLIKRITQLTTSGGSFPDLSEELRYFSTAFDHDAAAKTGVIAPQPGMDAEYDVVMDRIE
EIEKRLKTYLVEQERHFGCRVTYFGSDKKRYQLDVPESHAHKANKSYALEGQTKGKKPSR
RYTTAETKGLLKDMQQAEDAKNAVLKDLARRLFEKFSNHYEQWKQCIDCVANLDVLGSLA
EYARQQMVICVPELVSGVDQPFIELQEGYHPCVNTLTYIPNGLELGTKTEAPLSLLTGPN
MGGKSTLMRELGLLVIMAQIGAHIPAASCRLSLVDRIFTRLGAQDDILAGHSTFLVELNE
TSLILKHATCHSLVLLDELGRGTATYDGTAIAASVVNFLANLKCRTLFSTHYHNLIDYFH
NDQRVTLGHMACMVENEDTTDPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRA
FELSKKVEAIALQRKITAKIVASSGEKEVKQQKLHALKDLLQQLKMCHV
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagaagctgaatacgagtgtgggcggaacgcccacaaacaccttgtttaactat
ttcaccaagtcaccagccgtcgacaaaaaaaagcttgtgcccagcgtaaaggcggagtca
acgcctactgacagaacggactcagaaaaggagaatctcaacaatggcaagaacctggaa
gtgaagaaggagaccgagaccaagccttcggcaaagaggaagctgccaatttcgactccg
tcggatgaggaggagcttggtggtcggcgcaaaagaaaacgcatcgttctacccgagtcg
gagagcgaagatgagatggaggagaccaaatccgaagacgacttttccggcgatgagtct
gactatgaaccggacggaaaggatgatgctgccagtgaggaaagtgagagtggcgacgat
gagggcggagagcctatggatgacgaagaatcggaagacgatcccacgcccaaaaaatct
cgcaacaaggacaaaaaccacaataataacaacaatgagccggtgggccaaaaggttaaa
ctggctgaaggctccacattccaggagaagctaaaaaacatccagagcaatgtgaaacag
gatgcggcctacgatgagatagtgaccacttcatcgagcctcgatgagcctgtggtgtgg
cctcatcagaagctcgagttcttgcagccggacaagattaaggacaaggagggcaggcgc
ccagaccatccggactacgataagagcaccctgcatgtgcccgaaaagttcctcaacaac
ctgtcgcctggcgtgcgacagtggtgggttctgaagtcaaacaactttgactgcgttctg
ttctttaaagtgggaaaattctatgagctgtaccatggggatgccgatgtgggtgtcaat
gagctgggatttacctatatgcgtggcgagtttgctcactctggtttcccggagatatcc
tttgataaaatgtccacaatcctgatagataggggctacaaggtggctcgagtggagcaa
acggaaacgcccgacatggtgacagaaaggtgcaagcgcattaagtccaccaagttcgac
aaggtcgtggcccgtgagatctgtcagatcacgaatcggggaactcaggttttcgggtcg
cagtgtaaaatcggtcccaatcatcagcccaactacatgttggccctggtggagcaagac
gaggggacttggagcaggtttggcatttgctttatagacacatccatcggggactttcac
ctgggcgagttcgaagacgataagaactgctctcgattgctcacgctgctctcccatcac
atgcctgtgctccttctcagcgagaagtcagccctcagcttgcgcactcaacaggtcgta
cgcaccgtgctcggaggaatactgagggagcaactgcctagcaatggagctcatgtctgc
aacgctgagaagactctgaagctcttggccgagcgatactatgccggaaacggatccgag
gacaactggccgttggtcctacgcactatgcagtccgattcggatcacttgggtctcacg
ccctccgacaactacaagctggcattgaaggctctgggtcagtgcgtctatttcatcaac
aagtgtttgctggagccgaaagtactgcccatggctcgctaccagatgtatgtgccgccc
gatcagctggcagaggccaagccagcagtggtctccgccctgagacgctctcacatggtc
ctcgatgcaacaactctgtcaaacttaaggatcatcggcgaagaacacaccctgcagtcc
accttggaccattgctgcaccaagttcgggaagcggctgctgcaccactggctctgtgcc
cccagctgcgatatagagatactaaaagagcgacaggcagctattggagagcttttgcgg
ctgcccagtgagctgcaggagatgcgggcattgctggctcccatgcctgactttgagcgt
aatttggcgcaaatccatctcttcggcaacaagcaggtcaaacagaccggtcacccagac
tcccgggccatactcttcgaggagaagatttacaacaaacagaagctagtgggctttatg
gcagttctcaagggattcaatgctctgaccaagctacctctgatgttccagcaatgtgag
accccactgattaagagaataactcagctgactacttcgggaggatcatttcccgacctc
agcgaagagctgagatacttttccactgccttcgaccacgatgcagctgccaagacggga
gtaattgcgcctcagcccggaatggatgcagagtatgatgtagtcatggatcggatagaa
gagattgagaaacggctcaagacctacctcgtggagcaggagcgtcactttggctgccgt
gttacctactttggctccgataagaagcggtaccagttggatgttcccgagtcgcatgcc
cacaaggccaacaaatcgtacgccctagaaggtcagaccaagggaaagaagccctcgcgt
cgctacaccaccgcagagaccaagggactgctcaaggacatgcagcaagcagaagatgcc
aagaacgccgtgcttaaggacctggcccgtcgcctcttcgagaagttctccaaccattat
gagcagtggaagcagtgcatcgactgtgtcgccaatctggatgtgttgggctccctggca
gagtacgccaggcaacagatggtcatctgcgtaccagagctggtctctggagtagatcag
ccgttcatcgaactgcaggagggctatcatccctgtgtgaataccttaacctatattcct
aatggcctggaattgggtaccaaaacggaagcccccctatccctgctcactggacccaat
atgggaggcaagagcaccttgatgagggaactgggtctactggtgatcatggcacagatt
ggcgctcacataccagcagctagctgtcgtctttccttggtggatagaattttcacgcgg
ctgggcgctcaagatgatattttggccgggcacagtacgttcttggtggagctgaacgag
acttctctcatactgaagcatgccacatgccattccctggtgctgctcgatgagttgggc
aggggcacggccacatacgatggcacagccattgccgcttctgtggtcaatttcctagcc
aatctcaagtgtcgcaccctcttttccacccactaccacaatctaatcgattacttccac
aacgaccagagggtcaccctcggtcacatggcttgcatggtggaaaatgaggataccaca
gatcccactcaggaaacggttacgttcctctacaagtacacggccggtgcttgtcccaag
tcgtacggcttcaatgcggccaaattggctggcatgccccagggcattataaagcgggcc
tttgagctctccaagaaagtggaggccattgccctgcaacgcaagattacggcaaagata
gtagcctcgtcgggagaaaaggaagtcaagcagcagaaactacatgcgttgaaggaccta
ctacagcagttgaaaatgtgccatgtctaa
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