Drosophila pseudoobscura: 4815488
Help
Entry
4815488 CDS
T01032
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
dpo
Drosophila pseudoobscura
Pathway
dpo03020
RNA polymerase
dpo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dpo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
4815488
09124 Replication and repair
03420 Nucleotide excision repair
4815488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpo03021
]
4815488
03400 DNA repair and recombination proteins [BR:
dpo03400
]
4815488
Enzymes [BR:
dpo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
4815488
Transcription machinery [BR:
dpo03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
4815488
DNA repair and recombination proteins [BR:
dpo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
4815488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3137
Motif
Other DBs
NCBI-GeneID:
4815488
NCBI-ProteinID:
XP_015041237
UniProt:
Q29IN2
LinkDB
All DBs
Position
X:complement(4450665..4457646)
Genome browser
AA seq
1889 aa
AA seq
DB search
MSTTTDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGV
IDRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNP
KIKEIVVKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQPDPNKKPGHGGCGHYQ
PSIRRTGLDLSAEWKHPNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWM
IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIK
MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERID
LRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSC
TSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKM
TKRDVFITREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHST
HPDEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLELGHEIAGRF
YGNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPT
PGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV
GQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPT
VKLSNKAFEKRFKFDWSNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMQDRDHLRQ
IFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGADR
ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA
RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRIS
PWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENK
FQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEF
KAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQF
YGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAET
DPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGGTAMFIGGGSTP
SMTPPMTPWVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHPGSSPSS
PAPSMSPYYPASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYAAASPRYA
STTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSSTNY
SPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPATPSYSPTSPNYSASP
HYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY
SPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSP
MYSPTAPSHYSPTSPAYSPSSPTFEESDD
NT seq
5670 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccaccaccgactcgaaggcgcccctgcgccaggtgaagcgtgtacagtttgga
attttatcacctgatgaaattcgccgtatgtccgttaccgagggtggcgtccagttcgcc
gagacgatggaaggtggccgtccaaagctaggcggcctcatggatccccgacaaggtgtg
attgataggacatcccgatgccagacctgcgccggcaacatgaccgagtgtccgggccac
tttggacacatagatctggctaaaccggtattccacatcggcttcatcaccaaaaccatc
aaaattctgcgctgcgtttgcttctactgctccaagatgttggtctcgccgcataatccg
aaaatcaaggagattgttgtgaaatcgaagggtcagccacgcaagcgtctggcctatgtc
tatgatctatgcaagggcaagactatttgcgagggtggcgaggacatggacttgaccaag
gacaaccaacagccggatccgaacaaaaagccaggccacggcggttgtggccactaccag
ccctcgatacgcagaacgggcctagacttgtccgccgagtggaagcacccgaacgaggat
tcacaggaaaagaagattgtcgtttcggcagagcgcgtgtgggagatcttgaaacacata
accgacgaggagtgctttattctgggcatggacccgaaatacgcacgccccgactggatg
attgtcaccgtgctacccgttccaccactggccgtgcgtccggctgtggtgatgttcggg
gcggcaaagaaccaggacgatttgactcacaagctgtcggacatcatcaaggccaacaat
gagctgcgcaagaacgaggccagcggagcggcggcccacgttatacaggagaacataaag
atgctgcagttccatgtggccacgctggtggacaacgatatgccgggcatgcccagggcc
atgcagaagtcgggcaagcccctgaaggcgatcaaggcccgcctcaagggcaaggagggt
cgcatccgtggcaacttgatgggaaaacgtgtcgacttctcagcccgtaccgtcatcaca
ccggatcccaatttgcgcatcgatcaggtcggagtgccacgttcgatagcccagaatctg
acgttccccgagctggtgaccccattcaatattgatcggatgcaggagctggtgcgtcgc
ggcaactcgcagtatccgggcgccaagtacattgtccgcgacaatggggagcgcatcgat
ctgcgtttccatcccaagtcgtcggacctccatctgcagtgcggctacaaggtggagagg
catctgcgcgacgacgatcttgtgatcttcaatcgccagcccacgctccacaagatgagt
atgatggggcatcgtgtgaaggttctgccctggtccacgttccgaatgaacctctcctgc
acatcgccctacaatgctgatttcgatggcgacgagatgaacctccatgtgccgcagtca
atggagacgcgcgccgaggtggagaacattcacatcacaccgcgacagataatcacgccg
caggcgaataagccggtcatgggcattgtgcaggacactctcaccgccgtgcgaaagatg
accaagcgcgatgtgttcatcacgcgcgagcaggtgatgaatctgctgatgtttctgccc
acgtgggatggcaaaatgccgcagccgtgcatcctcaagccgcgtccgttgtggacgggc
aagcagatattttctttgatcataccgggcaacgttaacatgatccgcacccactccacg
catcccgatgaggaggacgatggtccctacaagtggatctcgcccggcgacaccaaggta
atggtggagcacggcgacctcatcatgggcatactctgcaagaagacgctgggcacatcg
gcgggctctctgctgcacatctgtttcctagagctgggccacgagatagccggacgcttc
tacggcaacattcagacggtgatcaacaactggctgctgctcgagggccacagcatcggc
attggcgacaccattgccgatccgcagacctacaatgaaattcagatggccatcaagaag
gccaaggacgatgtcatcaatgttatccagaaggcccacaacatggaactggaaccgacg
cccggcaacacgctgcgtcagaccttcgagaacaaggtgaatcgcatcctgaacgatgct
cgtgacaagaccggtggctccgcgaagaagtcccttaccgaatacaacaatctaaaggcc
atggtggtgtccggctccaagggctccaacattaacatttctcaggtcattgcttgcgtg
ggacaacagaatgtggagggcaagcgtatcccgtacggattccgtaagcgcacactgccg
catttcatcaaggacgattatggtcccgagtcgcgcggctttgtggagaactcgtatcta
gccggactgacgccgtcagagttctacttccatgctatgggcggtcgtgagggtctcatc
gatacggcggtgaaaacagccgaaaccggctacatccagcgacgtctgatcaaggctatg
gagtcggtgatggtcaactacgatggcaccgtgcgcaactctgtgggccagctgatccag
ctgcgctacggagaggatggcctctgcggcgagctggtcgagttccagaacatgccgacg
gtgaaactctccaacaaggcgttcgagaagcgcttcaagttcgactggtcgaacgagcga
tacatgcgcaaggtcttcacggacgaggtgatcaaggagatgaccgacagcagcgaggcc
atacaggatctcgaatcggagtgggaccacctgatgcaggatcgcgaccatttgcgacag
atcttccccaacggcgattcgaaggtggtgctgccctgcaatctgcagcgcatgatctgg
aatgtacagaagatattccacattaacaagcgcctgcccacagacctctcgcccatgcgg
gtgatcaagggcgtgaagaccctgctggagcggtgtgtaatcgtgactggcgccgaccgg
atatcaaagcaggccaacgagaatgccacgttgctgttccagtgcctaatccggtccacg
ctgtgcaccaaatacgtgtccgaggagtttcgcctctccacagaggcctttgagtggctg
atcggtgagatcgagacgcggttccagcaggcccaggcgaatcctggcgagatggttggc
gccttggccgcccagagtttgggcgaaccggccacccagatgacactcaacacgttccat
ttcgctggtgtgtcctcgaagaacgtgacactgggcgtgcctcgactcaaggagattatc
aacatctcaaagaaaccgaaggccccgtcactgacggtcttcctgacgggcggagccgcc
cgtgatgccgagaaggccaagaacgtgctctgccgcctggagcacacaacgctgcgcaag
gtgacggccaatacggccatctactacgatccggatccacagcgtacggtgatatcggag
gatcaggagtttgtgaatgtctactacgaaatgcccgatttcgatccgacacgaatctcg
ccctggctgctgcgcatcgagctcgaccgcaaacgaatgacggacaagaagctgaccatg
gagcagatcgccgagaagatcaatgtgggctttggcgaggatctcaactgcatcttcaac
gatgacaatgcggacaagctggtcctgcgcatccggatcatgaacaacgaagagaacaag
ttccaagacgaggacgaggccgtcgacaagatggaagatgacatgttcctgcgctgcatc
gaggccaatatgctgtcggatatgacgctgcagggcatcgaggccattggcaaggtctat
atgcatctgccgcaaacggacagcaagaaacggatcgtcatcaccgaaacgggcgagttt
aaggccatcggcgagtggttgctcgagacggacggcacatccatgatgaaggtcctctcc
gagcgggacgtcgaccccattcgcacctcctccaatgacatttgcgagatcttccaggtg
ctgggcatcgaggcggtgcgaaagtccgtcgagaaggagatgaacgcggtgctgcagttc
tacggcctgtacgtgaactaccgccatttggctctgctgtgcgacgtgatgaccgccaag
ggccatctgatggccatcacccgtcacggcatcaacagacaggacaccggcgccctcatg
cgctgctccttcgaggagactgtggacgtgctcatggatgcggctgcccacgcagaaacg
gatcccatgcgtggcgtatccgagaacataatcatgggccaactgcccaagatgggcact
ggctgcttcgatctgctgctggacgccgagaagtgtcgcttcggcatcgagatacccaac
accctgggaagcagcatgctgggcggcacggccatgttcattggcggtggctctacgccg
agcatgacgcctccgatgacgccgtgggtgaactgcaatacgccacgctacttctcgcca
ccaggtcatgtgagcgccatgacaccgggaggacctagtttttcgccatcggccgcctcg
gacgcgtctggtatgtctccgagctggtcgccagcacatccgggctcctcgcccagctct
ccggcaccctcgatgtccccgtactacccggcttcgcccagcgtgtcgccatcgtactcg
ccgacaagtcccaactacacggcctcgtcgcccggtggggcatcgcctaactactcgccc
tccagtcccaactattcgccgacatcgccgctatatgcagcggccagtccacggtatgcc
tccaccacacccaactttaatccgcagtcgacgggctactcgccatcggcgtcggggtac
tcgccgacatcgccggtatattcgcccacatccaacttcccgtcgagtccgtcgtttgcg
ggcagcggcagcaacatgtactcaccgggcaatgcctactcgcccagttccaccaactat
tctccgaactccccctcatactcaccgacatcaccctcgtactccccatcgagtccctcg
tactcgcccacgtcaccttgctattcaccaacatcgccttcgtattcgcccacttcaccc
aactatacgccagcgacgccctcgtattcgcccacatcgccaaactactcggcctcgccc
cactactcgccggcatcgccggcctactcccagacaggggccaagtactccccgacgtct
ccgacctattcgccgccttcgccctcgtacgatggctctccaggatcgccacaatacacg
cccggctcgccgcaatattcaccggcctcccccaagtactcgcccacatcgcccctgtac
tcgcccagttccccgcagcactcgccgtcgaaccagtacagtcccactggatccacgtat
tcggccaccagtccacggtactcgcccaatatgtccatctactcgccgagcagcaccaaa
tactcgccgacatcgcccacgtacacgcccacggcacgcaactattcacccacatcgccc
atgtactcgccgacagcgccatcgcactatagtcccacgagtccagcgtactcgcccagc
agtcccacgttcgaggagagcgacgactga
DBGET
integrated database retrieval system
