Drosophila pseudoobscura: 4816314
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Entry
4816314 CDS
T01032
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dpo
Drosophila pseudoobscura
Pathway
dpo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4816314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpo03019
]
4816314
03041 Spliceosome [BR:
dpo03041
]
4816314
03009 Ribosome biogenesis [BR:
dpo03009
]
4816314
03016 Transfer RNA biogenesis [BR:
dpo03016
]
4816314
Enzymes [BR:
dpo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
4816314
Messenger RNA biogenesis [BR:
dpo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
4816314
Spliceosome [BR:
dpo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
4816314
Complex C
U4/U6.U5 tri-SnRNP related factors
4816314
Ribosome biogenesis [BR:
dpo03009
]
Eukaryotic type
Pre-60S particles
Helicases
4816314
Transfer RNA biogenesis [BR:
dpo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
4816314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
4816314
NCBI-ProteinID:
XP_001356169
UniProt:
A0A6I8UJ27
LinkDB
All DBs
Position
4:complement(4982962..4986727)
Genome browser
AA seq
1057 aa
AA seq
DB search
MDIDELFDCFTEVPPESLEPPTPGPSKAKSATDKAAKKAPKRPADDAAIGEKHEEQEQQQ
HEEVAEEETTKRLKKEEEVAGKKGEDAEEEDLEEVVPLDVDDSGTLEALNTRIVTHLLEA
PESCTHEVAAYPDQEYIPLQPFAGIPAKEYPFVLDPFQRQAILCIDNSQSVLVSAHTSAG
KTVVAEYAIAKSLAAKQRVIYTTPIKALSNQKFREFTDEFKDVGLVTGDVTINPSASCLI
MTTEILRNMLYRGSEIMREVGWVVFDEIHYMRDKERGVVWEETLILLPDNVRYVFLSATI
PNARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQFKEDNFTTA
MAVLANAGEAGKGDQKGRKGGIKGHNSGQTNIFKIVKMIMERNFAPVIIFSFSKKDCEIF
AMQMAKLDFNTADEKKLVDEVFNNAMDVLSDEDRRLPQVENVLPLLRRGIGIHHGGLLPI
LKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGKDFRWISSGEYIQMAG
RAGRRGLDDKGIVILMIDEKVSPAVGRDIVQGKADPINSAFHLTYNMVLNLLRVEEINPE
YMLERSFYQFQNQAALPRLHDQVEQKTIELNKLSIKDEHNIASYHHIREQLESHGKQFRQ
WLTRPQYLLPFLQPGRLVKVSSGTQEYDWGIVLNFKKHDQSRKNPLKSEPSVTIDVLLHV
SEAAAKSGDTEPCQPNERGCMEVVPVAHTLITQISSIRVYFPNDLRSADNRRAVLKTIQE
AKKRFPLGPPVLNPIDDMNIKDREFRDIVDAIAQFESRLEEHPLHNSAELGRIHKRYQDK
VKLQAQLTAIKAELKAARSLLQMEELKHRKRVLRRMGYCKPGDVIEFKGRVACELSSADE
LLMTEMIFNGVFNDLTAPQAVALLSCFVCDEKSQEAPKSATELSGPLRSMQDLARRIAKV
SSECKLELDADSYVDKFKPFLMDVVLAWCKGSSFLAVCKMTDIFEGSIIRCMRRLEELLR
QMCQASKTIGNTDLENKFSEGIRLLKRDIVFAASLYL
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atggacattgatgagttattcgattgctttaccgaagtgccaccggagagcctggagccg
cccactccaggtcccagcaaggctaagtcagccacagacaaagccgccaaaaaggcgcca
aagcgtccggccgacgacgcggccattggcgaaaagcacgaggagcaagagcaacagcag
catgaggaggtggcggaggaggaaaccaccaagcgcttgaagaaggaggaagaagttgcc
ggcaagaagggtgaagatgcggaggaggaggatttggaggaggtggtgcccctggatgtg
gatgattccggcactctagaggccctgaacacacgcatcgtcacacaccttctggaggcg
cccgagtcgtgcacccacgaggtggccgcctaccctgaccaagagtacataccgctgcag
ccgtttgccggcattccggccaaggagtaccccttcgtgctggaccctttccagcggcag
gccatcctctgcatcgacaactcccagagcgtcctggtctcggcacatacctcggcggga
aagaccgtggtggcggagtacgccatcgccaagtccctggcagccaagcagcgcgtcatc
tacacgacacccatcaaggccctgtccaaccagaagttccgcgagttcaccgacgagttc
aaggacgtcggcctggtcaccggcgacgtgaccatcaatccctcggcttcgtgcctcatc
atgaccaccgagatcctcaggaacatgctgtaccgtggcagcgagattatgcgcgaggtg
ggctgggtggtctttgacgagatccactacatgcgcgacaaggagcgcggcgtggtgtgg
gaggagacgctcatcctactaccggacaacgtgcgctacgtcttcctctcggccaccatc
ccgaatgcccggcagttcgccgagtgggtctgccacctgcacaagcaaccctgtcatgtg
gtctacacggactaccgtcccacgccgctgcagcactacatcttccccgccggtggcgac
ggcatccatctaattgtcgacgaaaaggggcagttcaaggaggacaacttcaccacagcc
atggcggtgctggccaatgcgggggaggctggcaagggcgatcagaagggacgcaagggc
ggcatcaagggccacaattcgggacagacgaacatcttcaagatcgtcaagatgatcatg
gagcgcaactttgccccggtgatcattttctcgtttagcaagaaggactgcgagatcttt
gccatgcagatggccaaactggatttcaacacggccgacgagaagaagctcgtggacgag
gtcttcaacaatgccatggacgtgctctccgacgaggatcgccgcctgccgcaggtggag
aacgttctgccgcttctgcgtcgaggcataggcatccatcacggcggtctgctgcccatc
ctgaaggagaccattgagattctgttcggcgagggcctcatcaaggcgctctttgccacc
gaaacgtttgccatgggcctgaacatgccggccagaacggtgctcttcactgcaccccgc
aagttcgatggcaaggattttcgctggatcagctccggggagtacatccagatggcgggt
cgtgccggtcgtcgtggcctggacgacaagggcattgtcatcctgatgatcgacgagaag
gtctcgccggccgtgggccgggacatagtccagggcaaggccgatcccatcaactctgcc
ttccacttgacctacaacatggttctaaacctgctgcgcgtggaggagatcaatccggag
tacatgctggagcggagcttctatcagttccagaaccaggctgcactgcccaggctccac
gaccaggtggagcagaaaaccatcgagctgaacaagctgagtatcaaggacgagcacaac
attgcctcctatcaccacatccgcgagcagctggagagccatggcaaacagttccgccag
tggctgacgcgaccccagtacctgctgcccttcctgcagcccggaagactggtcaaagtg
tcgtccggaacccaggagtacgactggggaattgtccttaacttcaagaagcacgatcag
agccgcaagaaccccctcaagagtgagcccagcgtcaccatcgacgtcctgttgcacgtg
agcgaggccgccgccaagtccggcgacactgagccctgccaacccaacgagcgcggctgc
atggaggtcgtgccggtggcccacacgctcatcacacagatcagttcgattcgggtgtac
tttcccaacgatttgcgcagcgccgacaaccggcgcgccgtcctgaagaccatccaggag
gccaagaagcggttccccttgggaccaccagtgctgaatcccatcgatgatatgaacatc
aaggatcgcgagttccgcgacattgtcgatgccattgcccagtttgagtcgcgcctcgag
gagcatccgctgcacaattcggccgagctggggcgcatccacaagcgctaccaggacaag
gtgaagctgcaggcgcagctgacggccatcaaggcggagctgaaggccgcccgcagtctg
ctacagatggaggagctgaagcaccgcaagcgcgtgctccgccggatgggctactgcaag
cctggcgatgtcatcgagttcaagggccgcgtggcctgcgagctgagctcggcagatgag
ctgctcatgaccgagatgatcttcaatggtgtgttcaacgatctgaccgctccccaggcg
gtggcactgctctcgtgcttcgtctgcgacgagaagtcccaagaggcccccaagagtgca
acagagctctcgggacctctgcgctccatgcaggatctggcccgacgcattgccaaggtg
tcgtccgagtgcaagctggagctggacgcggacagctatgtggacaagttcaagcccttc
ctcatggacgtggtgctggcctggtgcaagggctccagtttcctggccgtctgcaaaatg
accgacatcttcgagggctccattatccgctgcatgcgtcgcctggaggagctgctgcgg
cagatgtgccaggcctccaagaccatcggcaacacggacctggagaacaagttctcggag
ggcattcgactgctcaagcgcgacattgtctttgccgcctcgctctatctataa
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integrated database retrieval system
