Drosophila pseudoobscura: 4816348
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Entry
4816348 CDS
T01032
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dpo
Drosophila pseudoobscura
Brite
KEGG Orthology (KO) [BR:
dpo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dpo03016
]
4816348
Enzymes [BR:
dpo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
4816348
Transfer RNA biogenesis [BR:
dpo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
4816348
Prokaryotic type
tRNA splicing ligases
4816348
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF6471
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
4816348
NCBI-ProteinID:
XP_001356267
UniProt:
Q29K48
LinkDB
All DBs
Position
4:3449750..3451800
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AA seq
506 aa
AA seq
DB search
MVVRSYNDELGYLEKINDHCWKIKKGFQPNMNVEGCFYVNSRLERLMLEELKNSCRPGAV
GGFLPGVKQIANVAALPGIVGRSIGLPDIHSGYGFAIGNMAAFDMDNPLSIVSPGGVGFD
INCGVRLLRTNLFEKDVQPVKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPAKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWSASKMGIEEKGQVVVMIHSGSRGFGHQVATDALVQMEKAMKRDKIETNDRQLACARIN
SVEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVE
NHIVDGKERKLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLVGGTMGTCSYVLTGTEQGM
QETFGSTCHGAGRALSRAKSRRNLDYKEVLDKLEQIGIAIRVASPKLVMEEAPESYKDVT
DVVDTCHAAGISKKCIKMRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtggttcgctcttacaatgatgagctcgggtatcttgagaagatcaacgaccactgc
tggaagatcaaaaagggcttccagccgaacatgaacgtcgagggatgcttctatgtgaac
agccggctggagcggctcatgctggaggaactgaagaattcgtgccgtcccggagcagtc
ggtggtttcctgcccggcgtcaagcaaatcgcaaatgtggccgcccttcccggtattgtg
ggtcgctcaattggcctgcccgacatacactcaggctatggattcgccatcggcaatatg
gccgcattcgacatggataacccgctgtcgatagtgagccctggtggcgtgggcttcgac
atcaattgcggggttcgcctgctgcgcaccaatctgttcgagaaggacgtgcagccggtg
aaggagcagctggcccagtctctgttcgaccacatacccgtcggcgtgggctcaaaaggc
atcattccgatgaacgcccgcgacctggaggaggccctggaaatgggaatggactggtcg
ctgcgcgagggctacgtctgggccgaggacaaggagcactgcgaggagtacggccgcatg
ttgaacgccgatcccgccaaagtgagcatgcgggccaagaagcgtgggctgccgcagctt
ggaacactgggcgcgggcaaccactacgccgaaatccaggtggtggacgaaatctacgac
aagtggagcgcctccaagatgggcatcgaggagaagggccaggtggtcgtcatgatacac
tctggaagccgcggctttggtcaccaggtcgccaccgacgcgctggtgcaaatggaaaag
gccatgaaacgggacaagattgagaccaacgatcggcagctggcctgcgcccgcatcaac
tctgttgagggacaggactacctgaaggccatggcggcggcggccaacttcgcctgggtc
aatcgcagctccatgaccttcctcacccgccaggcgttcgccaagatgttcaacaccact
ccggacgatctcgacatgcacgtcatctacgatgtttcgcacaacatcgccaaagtggag
aaccacattgtggacggcaaggagcgcaagctgctcgtgcaccgcaagggttccacgcgc
gcgtttcctccccaccatccactgatcccagtggactatcagctgactggccagcccgtt
ctcgtgggcggcaccatgggcacctgcagctacgtgctgactggcacagagcagggcatg
caggagaccttcggcagcacctgccacggagctggtcgggccttgtcacgtgccaaatct
cggcgtaatctcgactacaaggaggtgctggacaagctggagcaaatcggcattgccata
cgcgtagcctcacccaagctagtcatggaggaggctccagagtcgtacaaagatgtaacc
gatgttgttgacacctgtcacgcggcgggtattagcaagaagtgcatcaaaatgcgacca
atagcagtcattaagggctga
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