Drosophila pseudoobscura: 4816708
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Entry
4816708 CDS
T01032
Name
(RefSeq) DNA mismatch repair protein spellchecker 1
KO
K08735
DNA mismatch repair protein MSH2
Organism
dpo
Drosophila pseudoobscura
Pathway
dpo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dpo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
4816708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpo03400
]
4816708
DNA repair and recombination proteins [BR:
dpo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
4816708
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
FAM184
AAA_27
DUF1802
Motif
Other DBs
NCBI-GeneID:
4816708
NCBI-ProteinID:
XP_001356195
UniProt:
Q29KC0
LinkDB
All DBs
Position
4:4318035..4321729
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AA seq
914 aa
AA seq
DB search
MQAKATESRREPTLHMDTNARRNFIKYHAKLGEKPSTTVRFYDHSDCYTVNGSDDCELVA
KIVYKSTAFIGALLPDDKETLQFVALSKGNFEMAVRELLLVRNLRVEVYVKRNEWQLEYR
GSPGNLLQFEDILFANKEVLVGNNMISLQVKLEGGAQRRVGVASVEQNDCQFQLLEFLDD
DFFTELEATVVLLGPKECLLPSVEGEYVPVKALLERNGVMITVPKKSSANDLLQDLNRLL
RFAKGQQEDATGLKELQMLLASESLKVAIKYLDLVNDAGNLGHYEIKQLDLKRFVHLDSA
AVGALNIMPKPGTHPSMPSYRWQSILGVLDHCRTPQGHRLMGKWVKQPLRSQEILNDRHN
IVECLLESSDTLESLSLDYLKRIPDILMLTKKLMRRKATLQDLFRIYQVILRTPKIVQVL
LSLENSTVESVICSPFKSFLEDLTGLKQMVEQVVDFEAIERGEYLVKSSFDSRLMELQQT
MNELYDKMERLKSKCNDELDLDSKQIKLENVAKLGYHFRTTLKDDSVLRKNKNYRIVDVI
KGGVRFTSDKLEGYADEFASCHSRYEEQQLSIVEEIIQVAVGYAAPLTSLNNELAQLDCL
VSFAIAARSAPTPYVRPNMLAEGAGKLVLTDVRHPCLELQEHVSFIANSVYFKKDKCNMF
IITGPNMGGKSTYIRSVGTAVLMAHVGAFVPCGMATISMVDSILGRVGASDNIIKGLSTF
MVEMIETSGIIRTATDKSLVIIDELGRGTSTYEGCGIAWSIAEHLAKETKCFTLFATHFH
EITKLAETLPTVKNCHMAALADADNFTLLYQVRPGVMEKSFGIQVARLANFPEDVVQNAQ
EVYNEFEDEHADKKNQEDKALLEKIQVAIQQLSTAGNNTEINVEDLTQLVTQFTQDIKQL
DSDYFKSVLASTEV
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgcaagccaaagcaactgaaagccgtcgggagccaacgctgcacatggacacaaatgcg
cgtcgcaatttcataaagtaccatgccaagctcggcgagaaacccagcaccacagttcgc
ttttacgatcactcggactgctatacggttaacggcagcgatgactgcgagctcgtggct
aagattgtctacaagtccaccgcgtttattggggccctgctgcccgacgacaaggagact
ctgcagttcgtggccctgtcaaagggtaactttgagatggcagtgcgggagctgctcctg
gtgaggaatttgcgcgttgaggtctacgtgaagcgtaatgaatggcagctggagtaccgc
gggtctccgggcaatctgctacagttcgaggacatcttgtttgccaacaaggaggtctta
gtgggcaacaacatgatctcacttcaggtcaaactcgagggtggcgcccagcgacgcgtg
ggtgtagccagtgtggagcagaatgattgtcagttccaattgctcgagtttctagacgat
gacttctttacggagctggaggctactgttgtcctcttggggccgaaggagtgtttacta
ccctcggtagaaggagaatatgtgccagtcaaagctttgctggagcggaatggtgtgatg
attactgtgcccaagaagagcagcgccaacgatctcttgcaggacctgaatcgtttgttg
cgattcgccaaaggtcagcaagaggatgccaccgggctgaaggagctgcaaatgctgctg
gcttcggaatccctaaaggtggccataaagtacttggacttggtcaacgacgctggcaac
ttgggacactacgaaatcaagcaactagatctaaagcgatttgtccatttggactcggct
gctgtaggtgccttaaacattatgcccaagccggggactcatccgtccatgccctcgtat
cgctggcaaagcattttgggtgtcctggatcactgcagaactccacagggccaccgactc
atgggaaagtgggtgaaacaaccactgcgtagccaggagattctaaacgaccgtcataac
atcgttgagtgtcttttggagtcgtcagataccctcgagagccttagcttagattatcta
aagcgcattccagacattctgatgctgacgaagaagttgatgcgtcgcaaagccacgttg
caggacctgtttcgcatctatcaggtcatattacgaactcccaagattgtgcaggttctg
cttagtcttgagaactcgacggtcgagagtgtgatttgctctccctttaaaagcttccta
gaggatctaaccgggctcaagcagatggtcgagcaagtagtcgactttgaggcaatcgaa
aggggagagtacctggtcaaatcctccttcgacagccgcctgatggagctccagcagacg
atgaatgagttgtacgacaaaatggagcgcctgaagtccaaatgcaacgatgaactggat
ctggacagcaagcagatcaagctggagaatgtggccaagttgggataccatttccgtaca
accctgaaggatgactctgtgcttcgcaagaataaaaactatcgcatcgtagacgtgatc
aagggcggtgtgcgcttcacctccgacaaactggagggctatgccgatgagtttgccagc
tgtcacagtcgctacgaggaacagcaactatcgatcgttgaggagatcatacaggtcgct
gtaggctacgctgctccattgacctctcttaacaatgaactggcccagctggactgtttg
gtcagcttcgccatcgccgcccgcagtgctcccactccctatgtccgtcccaacatgcta
gcagaaggagctgggaaactggttctgacggatgtgcgtcatccctgcctggagctgcaa
gaacatgttagcttcatagccaacagtgtttacttcaagaaggacaaatgcaacatgttc
atcatcacgggccccaacatgggcggaaagagcacatacatacgctcagttgggactgcc
gtactgatggcccatgttggtgcctttgtgccttgcggcatggccaccatcagtatggtg
gattcaattctgggtcgtgtgggagccagcgacaatattataaagggcttaagtactttc
atggtggagatgattgagacttcgggtattataaggactgctactgacaagtctttggtc
attatcgacgagttgggacgcggaacatcgacctacgagggatgtgggattgcctggtca
attgccgagcatttggccaaggaaaccaaatgcttcacgctcttcgccacccacttccat
gagattaccaagctggccgagactttgccaacagtaaaaaactgtcacatggctgcgttg
gccgacgccgacaactttacgctgctctaccaggtacgtcctggtgtgatggagaagagc
tttgggattcaggtggcccgtctcgcaaacttccccgaggatgtggtgcagaatgcccag
gaggtatacaatgagtttgaggacgagcatgcagacaaaaagaaccaggaagacaaggca
ttgcttgagaagattcaggtcgccattcagcagctctcgacggctggcaacaatacggaa
ataaatgtagaggaccttactcagctggtcacacagtttacgcaggacatcaagcaacta
gacagcgactacttcaagtctgttttggcctccaccgaggtttag
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