Drosophila pseudoobscura: 6896840
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Entry
6896840 CDS
T01032
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
dpo
Drosophila pseudoobscura
Pathway
dpo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
dpo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
6896840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpo03021
]
6896840
03036 Chromosome and associated proteins [BR:
dpo03036
]
6896840
Transcription machinery [BR:
dpo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
6896840
Coactivators
SAGA/TFTC/STAGA complex
6896840
Chromosome and associated proteins [BR:
dpo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
6896840
STAGA complex
6896840
TFTC complex
6896840
SAGA complex
6896840
SLIK complex
6896840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WDR55
EIF3I
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
TFIID_NTD2
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_EML
NBCH_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_DCAF4
PEP5_VPS11_N
WD40_RFWD3
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_WDR19_1st
KNTC1_N
Beta-prop_VPS8
Beta-prop_IFT140_2nd
WD_LRWD1
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
6896840
NCBI-ProteinID:
XP_002137043
UniProt:
A0A6I8V271
LinkDB
All DBs
Position
2:3809149..3811225
Genome browser
AA seq
592 aa
AA seq
DB search
MKNSKVKRPSSEKIGGKGKINPEQNRDQVSVFSSEFFQVLHDIKNAVELSVKATVEKESS
NGFAGNSDAGTSMERIEVYKRGKDFYEGNAIVIRPAGELLYFAGIKDEEILLEYEEAFLC
TQKIVDAVPSYHKYEIFLMLYPMMTFAYLQMVMGEKLERATSFLKEAATYLDESYSRRID
KLKLIRKPDDLPGRALELLAGADTVEVAMVRPTYLLYINCVTDWTRGQQEKLLRHFAIRS
YNDEDPVQESTLPGLPQLEPLVNSSVDLPHCLPLDQDNRPMIFNFAAGGGDAKVLCCTPS
GDLSMVAIGLSNNNIRVTIGLDKISPDSNCRRDEKTLSGHKEPVLSLAFAPQNRFLLSSS
RDFTMRLWCVISWTCATVYSNHLCTFVAFAPRGFIFAGTSDDGIVRLWGSSTKKPFLQLA
GHLADMEVCLFHSNSRYLVTGSADCTVRMWDIKKGLQVRLFRGHKYNITALAFSKCGRYL
ISGGHDCLIIVWDTDSGRMVRTLKYHTSVINSIAVNVENNILAVGDDTDLSFWDLQLLVK
IYNPNPGDKESSAKPSNKKLLYRLFNNFKGSLRCLRFVCRNSILAICSLPTE
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaattcaaaagtgaaacgcccatccagtgaaaaaataggtggtaaaggaaagatc
aatccagaacagaaccgcgaccaggtttctgtgttttcgtcggagttcttccaagttctc
catgatataaagaacgctgtagaactatcagtgaaggcaaccgtagaaaaagaatcaagc
aatggcttcgcaggcaatagtgatgctggtacttccatggagcggattgaagtgtacaaa
cgtggcaaagatttctatgagggcaatgccatcgtcattcgcccagcaggcgaactctta
tactttgccggcattaaggacgaagagattcttcttgaatatgaagaggccttcctttgc
acccagaagatcgtcgacgctgttcccagctaccataaatatgaaatattcctgatgctc
tatcccatgatgacctttgcgtacctgcaaatggttatgggagaaaaattggagagggcc
acgtccttcttgaaggaggctgccacgtacttggacgagtcgtacagtcggcgcatcgac
aagctcaagctgattcgcaagccggatgacctgccgggaagggccctggagctgctcgct
ggtgcggacactgtggaggtcgctatggtccgtccgacctatcttctgtacataaattgc
gtgacagactggacgcgtgggcagcaggagaagctgctacgccatttcgccattcgcagc
tacaatgatgaggacccggtccaggagtcgaccttgcctgggctgcctcagcttgagcca
cttgtcaacagttcggttgacttgccgcactgtcttccactggatcaagacaatcggccc
atgatcttcaacttcgcagccggcggcggcgatgcgaaagttctctgttgcacaccatcg
ggggacctgtcaatggtggcaattggcttgagcaacaacaatatccgtgtcactataggc
ttggacaagattagtccggactccaattgccgcagggacgagaaaacactcagcggccac
aaggagccagtcttgtccctcgcctttgctccccagaaccgcttcctgctcagcagctcg
cgggacttcacgatgcgtctgtggtgcgtgatctcctggacctgtgccaccgtctattca
aaccatctttgcaccttcgtggcgtttgccccgcggggcttcatctttgccggcacctcg
gacgacggcattgtacgactctggggtagcagcacgaagaagccctttctccagctcgcc
ggtcatctggcagacatggaggtgtgtctgttccattccaacagccggtacctggtcaca
ggctccgccgactgcacggtgagaatgtgggacattaaaaagggccttcaagtgcgtctc
ttccgtggccacaagtacaacatcactgctctggcgttctcaaagtgcggccgttacctg
atctccgggggccacgattgcctcataattgtgtgggacacggacagcggacggatggtc
cgcaccctgaaatatcacacgtccgtcattaattcgattgctgtaaacgtggagaacaat
attctggcggtgggtgacgataccgatttgagcttctgggaccttcagctcctcgtgaaa
atctacaaccccaaccccggcgataaggagtcatctgcaaagccgagcaacaagaagctg
ctttaccgcttatttaacaattttaaaggatcgctgcgctgtcttcgctttgtttgtcgt
aattccatattggccatctgttcactcccaacggagtag
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