Drosophila pseudoobscura: 6900437
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Entry
6900437 CDS
T01032
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X16
KO
K06823
collagen type XVIII alpha
Organism
dpo
Drosophila pseudoobscura
Brite
KEGG Orthology (KO) [BR:
dpo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dpo04147
]
6900437
00535 Proteoglycans [BR:
dpo00535
]
6900437
00536 Glycosaminoglycan binding proteins [BR:
dpo00536
]
6900437
Exosome [BR:
dpo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
6900437
Proteoglycans [BR:
dpo00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
6900437
Glycosaminoglycan binding proteins [BR:
dpo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
6900437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Motif
Other DBs
NCBI-GeneID:
6900437
NCBI-ProteinID:
XP_002134828
UniProt:
B5DQN2
LinkDB
All DBs
Position
X:complement(44917771..44974126)
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AA seq
795 aa
AA seq
DB search
MAMVISTRAKLVITALILFFLLGIVLVTGSTKGWFNPNRYNGERVAARIQATDIFDASGM
QPPGQTQYTHERPYRGIKGEKGERGPKGDSIRGPPGPPGPPGPKGEAAAYPPFVETTSAG
AKYTGECTCNASDILEAIKDNESLRETLRGAPGTQGKDGKPGTPGHTGATGVPGARGARG
SEGAQGQKGEPGVDGLPGVAGPPGPAGPPGLPENYDESLMVNSMGTFRGTTQPGPKGVSG
EKGEAGQKGERGDPGHKGAHGSNGAKGEPGEPGTPGLPGLPGQAGQPGGLEGLSANGTKG
EKGEKGMRGRRGGTGSTGPIGPPGKPGAMGDIGHSGRPGMTGPKGEMGPKGPKGDTGGRE
GPKGDKGDTGQDGRDGLPGPPGLPASGGGDGDSSGVQYIPMAGPPGPPGPPGLPGLSITG
PKGEPGMDSRSFFGDASYYGRPEAPRQPGHSHKHEEALGPAVGEEPYFSASSSNINMKIV
PGAVTFQNIDEMTKKSALNPPGTLAYITEEEALLVRVNKGWQYIALGTLVPIATPAPPTT
VAPSMRFDLQSKNLLNSPPPPLNTPTFTTAPEYETWYPRMLRVAALNEPSVGDLQGIRGA
DFACYRQGRRAGLLGTFKAFLSSRVQNLDSIVRPADRDLPVVNTRGDVLFNSWKGIFNGQ
GGFFSQAPRIYSFSGKNVMTDPLWPLKMVWHGSLPNGERSMDTYCDAWHSSAHDKSGYAS
DLAGHKLLEQKRQPCDGKLIVLCVEALSQDRKRKKRDASDSHSYGHSHSRGPSRSQNLEF
RTAEEYAAHLDDLLL
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggtcatatcgacgcgtgcgaaactcgtgattaccgcgctgattctgttcttc
cttctcggcatcgtactcgtcacgggctccacgaagggatggttcaatcccaaccgctac
aacggcgagcgggtggcagctaggatacaggcaacggacatcttcgacgccagtggcatg
cagcccccaggacagacgcagtacacgcacgagagaccatatcgcggcatcaagggcgag
aagggtgagcgcggaccaaagggcgacagtatacgtggcccccccgggccgccgggtcca
cctggacccaagggcgaagcggctgcctatccaccctttgtcgagacaacgagtgcgggg
gctaaatacactggcgaatgtacatgtaatgcgtctgatatcctagaagccatcaaggac
aacgagtcgttgcgggagacgttgcgcggtgcgcccggtacgcagggcaaggacgggaag
ccaggcacccctggtcacaccggagccaccggcgtgcctggagctcgaggcgcccgggga
tccgaaggtgcccagggacagaagggcgagccaggcgtcgatggtctgcccggagtcgcg
ggtccaccgggaccagcaggcccgcctggtttgccagagaactacgatgagtccttaatg
gtcaactcgatgggcacattccgaggcacgacgcagccaggacccaaaggtgtgtccggc
gagaaaggtgaagcgggccagaagggcgaacgcggcgatccgggtcacaaaggtgcgcat
gggtccaacggcgcaaagggtgagcccggcgagccaggaactcccggactgcccggcctc
ccgggccaggctggccagccgggcggactcgagggcctttccgccaacggaaccaagggc
gagaagggtgaaaagggcatgcgaggacgtcgcggcggcaccggatccactggaccaatt
ggaccgcctggcaagccaggagccatgggcgatattggacactcgggccgacccggcatg
acaggaccaaagggtgagatgggaccaaagggtcccaaaggagacactggcggtcgcgaa
gggcccaaaggtgacaagggtgacactggccaggacggacgcgacggcctgccaggccct
ccgggactacccgcatcgggcggcggggacggagacagcagtggagtccagtacatacca
atggctggaccgcctggtcccccgggaccccccggactgccgggactgtcgataaccggc
cccaagggcgagccgggcatggactcgcggagcttctttggcgacgcctcgtactacggc
cgaccagaggctcctcgccagccgggacactcacataagcacgaagaggccttgggtcca
gcagtgggcgaggaaccatacttttcggcctcatcgtcgaacataaacatgaagattgtg
cccggcgcagtcaccttccagaatatcgatgaaatgacaaagaaatcggcactcaacccg
cctggaacactggcctacatcaccgaggaggaggcgctccttgtgcgcgtcaacaaggga
tggcaatacattgcgctgggaaccctggtgccgatcgccacgcccgccccgcccaccacg
gtggcgccatcaatgcgcttcgacctgcaatcgaagaacctgctgaacagtccaccaccc
cccctcaacacgcccacgtttaccaccgcgcccgaatacgaaacgtggtatccgcgaatg
ctccgcgtggccgcattgaacgagccctccgtcggcgacctgcagggaatccgcggcgcg
gactttgcctgctaccggcaggggagacgagccggtctgctgggcaccttcaaggcgttc
ctctcctccagggtacagaacctggactccattgtccgtccggctgaccgggacctgccc
gtggtgaacacgcgcggcgatgtgctcttcaactcgtggaagggcatcttcaacggacag
ggcggcttcttctcccaggcgccgcgcatctacagcttcagcggcaagaatgtgatgacg
gatccgctatggcccttgaagatggtttggcatggatcgctgcccaatggagagcgctcc
atggacacatactgcgatgcctggcactcgagtgcccacgacaagagcgggtacgccagc
gatctggcaggccataagctgctcgaacagaagcgccagccctgcgatggcaagctgatt
gtgctctgcgtggaggccctctctcaggatcggaagcggaagaagcgggacgccagcgac
agtcacagctatggccacagtcacagtcgtggtcccagtcgcagccagaatctggagttc
cgcacagcagaggagtatgcagcgcatttggacgatttactgctgtaa
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