Dreissena polymorpha (zebra mussel): 127834155
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Entry
127834155 CDS
T08834
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
dpol
Dreissena polymorpha (zebra mussel)
Pathway
dpol03020
RNA polymerase
dpol03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dpol00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
127834155
09124 Replication and repair
03420 Nucleotide excision repair
127834155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpol03021
]
127834155
03400 DNA repair and recombination proteins [BR:
dpol03400
]
127834155
Enzymes [BR:
dpol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
127834155
Transcription machinery [BR:
dpol03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
127834155
DNA repair and recombination proteins [BR:
dpol03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
127834155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
EutB
Motif
Other DBs
NCBI-GeneID:
127834155
NCBI-ProteinID:
XP_052215749
LinkDB
All DBs
Position
6:5102985..5143127
Genome browser
AA seq
1848 aa
AA seq
DB search
MAYTGDSNATLRDVKKVQFGILGPDELRRMSVVEGGLKYSETMEGGRPKLGGLMDPRQGV
VDRNSRCQTCAGTMSECPGHFAHIELAKPVFLIGFLTKTIKVLRCVCFYCSKLLIEPSNP
KMKDIIQRSKGHPAKRLAHVYDLCKSRKICEGGEEMDTKLEKADDEGGGGDEQKKGHGGC
GRYQPTIRRMGLELTCEWKKTNEETQEKKIVLTAERVYEVFKRISDEECIVLGMDPKFAR
PDWMICTVMPVPPLCVRPAVVMFGSARNQDDLTHKLSDIIKANNQLKRDEQNGAAAHIIA
EDTKMFHVATLTDNELPGLPRAVQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTV
ITPDPNLRIDQVGVPRTIAQNMTFPEIVTPFNIDRLHELVRRGANQYPGAKYIVRDNGER
IDLRFHPKASDLHLQIGYKVERHMQDGDYIVFNRQPTLHKMSMMCHQVKVLPWSTFRMNL
SCTTPYNADFDGDEMNLHLAQSLETRAKISQLASVPRMIITPQSNRPVMGIVQDTLTAVR
KMTKRDVFLDRGQVMNILMFLPSWDGHMPHPAILKPKPMWTGKQVFSLIIPGRVNLIRTH
STHPDEEDKGPYKWISPGDTKVLIEDGQLLSGILCKKSLGASTGAIAHVVFLELGWEQAG
FLYGNIQTVVNNWLLIEGHSIGIGDTIADPQTYIEIQDTIKKAKLDVIEVIEKAHNDELE
PTPGNTLRQTFENQVNRILNDSRDKTGSKAQKSLSEFNNFKAMVVAGSKGSKINISQVIA
CVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREG
LIDTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQVEQLIQLRYGEDGLDATRVELQAL
PTLKPSNRAFEKNFKFDATNERQLKKSLTEDVVCDLLSDANCLSEIEQEWEQLVDDRNAI
RQIFPSGDSKVVLPCNLQRMIWNAHKIFKINKRSLTDIHPTKIIDDVRQLCKRLTVVPGN
DHLSIXSNENATILMKVLIRSTFCSKRVIEEFRLSNEAFVWLIGEIETKFQHAQVHPGEM
VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIFNISKKPKTPSLTVFLTGQ
ASRDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPTNTVIAEDQEWVNVYYEMPDFDVTK
ISAWLLRIELDRKRMTDKKLTMESISEKITAGFGDDLNCIFNDDNAEKLVLRLRIMNSED
SKMQETLGIEAVRKSIEKEMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITHHGINRQ
ETGALARCSFEETVDIQMEAAAHAESDPMKGVSEAIMLGQLARIGTGCFDLLLDAEKCKY
GMEIPNTMGPGMMGGLGMIMGVAGSPAPGMSPQMTPWNQGATPGYASAWSPGVGSGMTPG
AAGFSPSQSESGYSPGYSPAWSPQPGSPSSPSSPYIPSPRGPMSPSYSPTSPSYIPSSPA
MSGGTPQSPGYSPTSPSYSPTSPGYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSSPSYSPSSHSYSPSSPAYS
PSSPNYSPSSPSYFXSSPKYSPQSPSYSPTSPSYSPSSPKYSPTSPSYSPGNFSYSPSSP
QYSPSSPAYSPSSPAYSPGMASDRGSHKYSPSSPQYSPTSPTYSPSSPQYSPASPSYSPS
SPQYSPASPSYSPSSPQYSPSSPAYTPTTPKYSPTSPTYSAADDSDSD
NT seq
5547 nt
NT seq
+upstream
nt +downstream
nt
atggcgtatactggagattccaatgcaacgcttcgtgatgtgaagaaagtgcagtttggc
attcttgggccagatgaacttcgaaggatgtcggttgtggagggtggactcaaatattct
gagaccatggaaggaggaagaccgaaacttggcggacttatggaccctcgacaaggggta
gtcgaccgaaatagtcggtgtcaaacctgcgctgggaccatgtccgagtgtcctgggcac
tttgcacatatcgaactggccaagcctgtattcctcattggttttcttacaaagacgatc
aaagtgctccgatgtgtctgcttctactgttccaagcttcttattgagccttccaacccg
aagatgaaggacattattcagaggtcaaaaggtcaccctgccaagcgacttgcacatgtg
tacgacctgtgtaagagccgtaagatttgcgagggcggtgaggaaatggacacgaaactg
gaaaaggctgatgacgagggtggtggtggagatgaacaaaagaaaggtcatggtggttgt
ggtcgctaccagcctaccatccgtcgtatgggacttgaactgacctgtgaatggaaaaag
acaaatgaggaaacacaggagaagaagattgtgctgactgcagagcgtgtatatgaggtc
ttcaagaggatttctgacgaagagtgcattgttcttggtatggatcccaagtttgcgcgt
cctgactggatgatctgtactgtgatgccagtgccacccctgtgtgtaagaccggctgtt
gtcatgttcggttctgccagaaatcaggatgacttgactcacaagctgtctgacatcatc
aaagccaacaaccagctgaagagggatgaacagaacggtgctgcggcgcacattattgct
gaggacacaaaaatgttccacgtggccactctgacagataacgagctgcccggactgcca
agggctgttcaaaagtccggccgtcccctgaagtccatcaagcagcgcctgaagggcaag
gaaggcagagtaagaggcaacctgatgggtaaacgtgtggacttttcagcccgtaccgtc
atcacgcctgacccgaatcttcgtatcgatcaggtcggagtgccccgtaccatagcacag
aatatgacctttccggagatcgtcacgccatttaatatcgacagactgcatgagctggta
cgtagaggtgccaaccagtacccgggggccaagtacattgtgagagacaatggggagaga
atcgatctacgattccacccgaaggccagtgacctgcatctccagattggatacaaggtt
gagcgtcacatgcaggacggggactatatcgtgttcaacagacagcccacccttcacaag
atgagtatgatgtgtcaccaggtgaaggtgctgccctggtccacattcaggatgaacctc
agctgcacaaccccatataacgctgactttgatggagacgagatgaacctccatcttgcc
cagtccctggagacccgagctaagatctcacagctggcttccgtaccacgcatgatcatc
acgccgcagtccaaccggcctgtcatgggtatcgtacaggacaccctgacagctgtacgc
aagatgaccaagagggatgtgtttctggacaggggccaggtgatgaacatcctaatgttc
ttgccaagctgggacggccacatgccccaccctgccatccttaaacccaagcccatgtgg
acgggcaagcaggtcttctcactgatcatcccgggccgtgtgaacctgatccgcacccac
agcacacaccctgatgaggaggacaagggtccgtacaagtggatatcacccggggacacc
aaggttctgatagaggatgggcagctgctctcaggcatcctgtgtaagaagtccctgggg
gcgtctaccggtgccatcgcccacgtcgtcttcctggagctcggctgggaacaagcaggt
ttcctatatggcaacattcagactgtggtgaacaactggctgcttattgaaggtcacagt
atcggtattggtgacactattgccgacccccagacctacattgagattcaggacactatc
aagaaagccaagctggatgtgatagaagtcatcgagaaggctcacaatgatgagctggag
cccacacctggtaacacgctgcgacagacgttcgagaaccaggtgaaccgtatcctcaac
gattcgagagacaagaccggcagcaaggcccagaagtccctgtcggagttcaacaacttc
aaggccatggtggtggcagggtccaaaggctcgaagattaatatctcccaggttattgcc
tgtgtgggccagcagaacgtagaaggaaagcgtattccgtttggcttccgtcaccgcacg
ctcccgcacttcatcaaggacgattacgggcccgagtcgagaggtttcgtagagaactcg
taccttgccggtctcacgccttcagagttcttcttccacgccatgggaggtcgtgagggt
ctcattgatacagccgtaaagacggcagaaactgggtatatccagcgccgtctcatcaag
gccatggagagtgtgatggtcaagtacgatggaaccgtcagaaatcaggttgagcagctg
atccagctgcgttatggagaagatgggctggatgctacgagggtcgagctccaggcactg
cccacactcaaaccttccaacagggccttcgaaaagaacttcaagtttgacgccaccaac
gagaggcagttgaagaagagtttgacggaggatgtggtttgcgacctcctctcggatgcc
aactgtctgtctgagatagagcaagaatgggagcagcttgtagatgatcgtaacgcgatc
cgtcagatcttcccgtccggggacagcaaggtcgtgttgccatgtaacctgcagcggatg
atctggaacgctcacaagatcttcaagattaacaagcgtagcttgacagatatacatccg
accaaaatcattgatgatgtgaggcagctgtgcaagagactgactgtggtgcctggaaac
gatcacctctctatctagtccaatgagaacgccaccatcctgatgaaggtgctaatccgg
tctacgttctgctccaagcgcgtcattgaggagttcaggctgtccaacgaggcttttgtt
tggctgattggagagattgagactaagttccaacatgcccaggtccaccctggtgagatg
gtgggagcccttgccgcccagtccctgggagagcccgccacccagatgaccttgaacacg
ttccattacgccggtgtgtctgccaagaacgtcaccctgggtgtgcccaggcttaaggag
atctttaacatctccaagaagcccaagaccccctcactgacagtgttcctcactggtcag
gcatccagggacgctgaaaaggccaaggacgtgctgtgccgtctagagcacacgaccctt
cgcaaggttacggctaacaccgccatctactacgacccagaccccaccaacacagtgatt
gctgaggaccaggagtgggtgaacgtgtactatgaaatgccagattttgatgtgaccaag
atctccgcctggttgcttcgtatagagctggacaggaagaggatgacagataagaagctg
accatggagtcgatatcggagaaaatcactgctggtttcggtgatgacctgaactgcatt
ttcaatgatgacaatgcagagaagcttgtattacgactgagaatcatgaattctgaggac
agcaagatgcaagagacactaggtattgaagctgtccgaaaatcgatagagaaggaaatg
aaccatgtgatctcctttgacggctcctatgtgaactaccgccacctggctttgctgtgt
gacgttatgactgcaaaaggtcatttaatggccatcacacatcatggtatcaacaggcag
gagactggcgcactggctcgatgttcctttgaagagactgttgatattcagatggaagct
gcagcccacgctgagtctgacccaatgaagggcgtgtctgaggcgatcatgctgggacag
ctggcgcgtatcggcacaggttgctttgacctgctcctggacgcagagaagtgcaaatat
ggcatggaaatacccaacaccatggggcctggcatgatgggaggtctaggcatgataatg
ggtgtggccggcagccctgctccgggaatgtccccgcagatgaccccctggaaccagggc
gctactcccgggtacgcaagtgcctggtccccaggggtgggaagcggtatgaccccaggg
gcagctggattttcaccgtctcaaagcgagagcggttacagtcctggctacagtcctgcc
tggtcaccacagcctggctcacccagctcgccctccagcccgtatattccgagcccgaga
ggtccaatgtcgcccagctacagccccacctccccttcatatattcccagctcgcctgca
atgtctggaggcactccacagagtcctgggtactctcccaccagccccagttacagtcca
acaagccctgggtattcaccgacatcgcctaactacagtccgacatcaccatcgtattca
cctacaagtccatcatacagtcctacgagtccatcatacagcccgaccagtccgtcatat
tccccaaccagcccaagctacagtccaacaagtcctagctactctccaacgtcgcccagt
tacagccctacttcaccgagctacagtccgacaagccccagctattccccaaccagccct
agttattctcccacgtcaccgagttacagtccaacctcaccctcctactcccccacatcc
cctagctactcccccacgtccccgagctacagccctacaagcccctcttactcccccacc
tcccctagctattcccctacgtctcccagttactcccctacgagccccaattacagcccc
agctcgcccagctacagcccctccagccatagctactccccttcgtcacctgcttactcc
ccctccagtccgaactacagcccctcttcaccctcatactttnnctcctcaccgaaatac
agcccacaatccccctcctactcgccaacaagcccctcatattcaccctccagtcccaaa
tattcacccacatcgccgagctactcccctggaaacttcagctactcgccaagctcccct
caatattccccctcatccccggcatattcaccctcctcccctgcatacagcccaggcatg
gccagtgaccgaggctcacacaagtactcgccaagctccccacagtacagtccgacatcc
ccaacatattctccctcaagcccacagtactcgcctgccagtccaagctattctccatca
agtccgcaatattcgcccgctagtccgtcatacagcccatcaagtccacaatacagtcct
tcgtcccctgcttacactccaacaactccgaagtattcccctactagcccgacatacagt
gctgcagatgatagtgattcagattag
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integrated database retrieval system
