Dreissena polymorpha (zebra mussel): 127837531
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Entry
127837531 CDS
T08834
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
dpol
Dreissena polymorpha (zebra mussel)
Pathway
dpol03013
Nucleocytoplasmic transport
dpol03015
mRNA surveillance pathway
dpol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127837531
09122 Translation
03013 Nucleocytoplasmic transport
127837531
03015 mRNA surveillance pathway
127837531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpol03019
]
127837531
03041 Spliceosome [BR:
dpol03041
]
127837531
Enzymes [BR:
dpol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127837531
Messenger RNA biogenesis [BR:
dpol03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127837531
Spliceosome [BR:
dpol03041
]
Complex C
Other components
EJC/TREX
127837531
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127837531
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
127837531
NCBI-ProteinID:
XP_052220660
LinkDB
All DBs
Position
7:complement(68258296..68288875)
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AA seq
426 aa
AA seq
DB search
MADTEQADELLDYDEEETEATAEGAGDAPAKKDVKGTYVSIHSSGFRDFLLKPELLRSIV
DRGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVLAH
TRELAFQISQDYERFSKYMNNVKIAVFFGGMPIKKDEEVLKKNCPHIVVGTPGRMLALIK
SKALNVKNVKHFILDECDKMLCELDMRSDVQEIFRMTPHEKQVMMFSATLSKDIRPICKK
FMQDPMEVFVDDDSKLTLHGLQQHYVKLKDNEKNRKLFELLDVLEFNQVIIFVKSVQRCM
ALAQLLHEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFN
YDMPDDSDTYLHRVARAGRFGTKGLAITFVSDETDAKVLNDVQERFEVNISELPDEIDIS
SYIEGR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggcagacactgaacaagctgatgaactgctggactacgacgaggaggagacagaggca
accgctgaaggggcgggtgatgccccagctaagaaagacgtcaagggaacctatgtctcc
attcacagctctggcttcagagatttcttgctcaagccagaattgctgagatccattgtg
gaccgaggttttgagcatccatcagaagttcagcatgagtgcattcctcaggccatactt
tccatggacgtgttgtgtcaggctaagtcaggtatggggaagacggccgttttcgtgctg
gctaccctgcagcagctggagcccgttgatggacaggtatccgtgctagttcttgcccac
acgagagagctggcgttccagatcagccaggactatgagcgcttcagcaagtacatgaac
aatgtgaagattgcagtgttctttggcggcatgcccataaagaaggacgaggaagtcctc
aagaagaactgcccccacatcgtggtgggaacgcccgggcgcatgttggcgctaatcaag
tcgaaggcactcaacgtgaagaacgtgaagcattttattctggacgagtgtgacaagatg
ctctgtgagcttgacatgcggtctgacgtccaggagatattcaggatgaccccccacgag
aagcaagtgatgatgttcagtgctacactgagcaaggatatccgccccatctgcaagaag
ttcatgcaagatcccatggaagtgtttgtggacgatgactccaagctcaccctgcacggt
ctccagcaacactacgtgaaactcaaggacaacgagaagaacagaaagctctttgaactg
ctcgacgtactggagttcaaccaagtgatcatctttgtcaagagtgttcagagatgtatg
gcattggcacagctccttcatgaacagaacttccctgccatcgctatacacagggccatg
actcaggaagaaaggttgtcccggtaccagcagttcaaggacttccagaaacgtatcctg
gtggccaccaacctgtttggtcgcggtatggacatcgagagagtcaacatcgtcttcaac
tatgacatgccagacgattcagacacatacctacacagggttgccagagcaggcagattt
ggtacaaagggtctcgctatcacgtttgtttctgatgagacggacgcaaaggttctcaac
gatgtgcaagagagattcgaggtcaacatctctgaattacctgacgaaattgacatctca
tcatacattgaaggccgatga
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