Dreissena polymorpha (zebra mussel): 127837783
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Entry
127837783 CDS
T08834
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dpol
Dreissena polymorpha (zebra mussel)
Pathway
dpol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127837783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpol03019
]
127837783
03041 Spliceosome [BR:
dpol03041
]
127837783
Messenger RNA biogenesis [BR:
dpol03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
127837783
Spliceosome [BR:
dpol03041
]
Complex B
Other components
Prp19-related factors
127837783
Complex C
127837783
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_15
NRDE-2
PPR
Motif
Other DBs
NCBI-GeneID:
127837783
NCBI-ProteinID:
XP_052221119
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All DBs
Position
7:17785321..17837400
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AA seq
857 aa
AA seq
DB search
MVVKQCSSDVKMPVVDKDPRKNIFFEEEDLPFEEDILRNPYTVKCWLRYIEHKKEASVSA
LNVIYERALKELPGSYKLWYHYLKLRRQQVKGKCITEPAFEDVNSAHERSLVFMHKMPRI
WLDYCEFLMSQGLITRTRRTFDRALRALPITQHPRIWPLYIKFVRMYDLKETAVRVYRRY
LKLCKENAEEYIEYLKTIGWLDEAAQKLADIINDESFVSKEGKSKHQLWNELCDLVAKNP
DKVTSLNIEPIIRQGLKRYTDQIGVLWNSLADYYIRGGHFERARDIYEESVQTVITVRDF
TQVFDAYAQFEKNLISAKMESMEESGPTEDDDLDLELRLSRLESLMDRRPLLLNSVLLRQ
NPHNVHEWHKRVKLLEGKPREIITTYTEAVQTVDPKLASGKPHTLWCEFAKFYEGADQIE
DARVIFDKAIKVGYKHVDDLASVYCEWCEMEIRHENYEDSLKIMQKATTPPPRSVAYHDE
TETVQSRVHKSLKVWSLYADLEESFGTFKSCKAVYDRIIDLRIATPQIIMNYGLFLDENN
YFEEAFKAYEKGIALFRWPNVYDLWNTYLSKFIDRYGGKKLERARDLFEQCLENCPPKFA
KAIYLLYAKLEEDFGLARHAMAVYDRATQAVLPEEQYEMFNVYIKRAAELYGVTYTRPIY
EKAIEVLTNDQAREMCLRFADLERKLGEIDRARAVYAHCSQICDPRSTANFWQTWKDFEI
KHGNEDTVREMLRIKRSVQAMYNTQVNFMSAQMLAVASSKENQGDAPDVSDEMRKLEEKA
RQLAEEAMKDQSKPDKGILFVRSNTTDEELGEMTKTTNPDEINIDEDFSTDEDEEVEEVQ
RQSVPMEVFGGLATEED
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atggtagtgaaacaatgctcttctgacgtcaaaatgccggtagtagacaaagatcctagg
aaaaatatattcttcgaagaggaggaccttccatttgaagaagatatactccgcaatcct
tacacggtgaaatgctggctgcgctatatcgagcacaagaaggaggccagtgtcagtgcc
ctcaatgtcatctatgagagagccctcaaggagctacctggaagctataagttatggtac
cattatctgaagctgcgtcggcagcaggtcaagggaaagtgtatcacggagcctgccttc
gaggatgtgaacagtgcgcacgagaggtcgctcgtgttcatgcataaaatgccaaggatc
tggctagactactgcgagttcctcatgtcgcagggtctgatcacacgcacacgccgcaca
tttgaccgagctcttcgggccctgcccatcacgcagcatccccgtatctggccgctgtac
atcaagtttgtgcgtatgtacgacctcaaggagacagctgtgcgggtgtatagaaggtac
ctcaagctgtgtaaagagaacgcggaggagtacatagaatacttgaagacgattggttgg
ttggacgaggccgctcagaaacttgctgacatcattaacgatgagagctttgtgtccaag
gagggaaaatcgaaacaccagctctggaatgaactctgtgacctggttgctaagaaccca
gacaaagtgacgtcactcaacatcgagccaatcatacggcagggattgaagcgctacacg
gaccagataggtgtgctctggaattcactagctgactactacatcaggggcgggcatttt
gaaagggctcgggacatctacgaggagtcggtgcagacagtgatcacagtgcgagacttc
acgcaggtgtttgacgcgtatgcccagtttgagaagaacctgatcagcgccaagatggag
tctatggaggaaagcgggcctactgaggatgatgaccttgatctagagttgcgtctttcc
cgcctcgagtccctgatggaccgcaggccccttttgctgaacagcgtgttgctccgccag
aatccacacaacgtgcacgagtggcacaagagagtgaaactgttggaagggaaacctagg
gagatcatcaccacatacacagaggcagtgcagaccgttgaccccaagctggcctcgggt
aaacctcacacactctggtgcgaatttgcaaagttctacgaaggtgccgaccagattgaa
gacgcccgggtgatattcgacaaggccatcaaagtgggctacaaacacgtggatgacctg
gcctcggtgtactgtgaatggtgtgagatggaaatcagacatgagaactacgaagattca
ctcaagatcatgcagaaggctacaacaccgccaccaaggagcgttgcgtatcatgatgag
acggagaccgttcagtcaagagttcacaagtcactcaaggtgtggtccctgtacgcagac
ctggaagaaagcttcggtactttcaagtcctgtaaagcagtttacgatcgcatcatcgac
ctacgtattgccaccccgcagatcatcatgaactatggactgtttctggacgagaataac
tactttgaggaggcctttaaagcctatgagaagggtatagccctgttccggtggcccaac
gtgtatgatctgtggaacacctacctgtccaaattcatcgacagatacggaggaaagaag
cttgagcgagctagggatctgtttgaacaatgtcttgagaactgcccaccaaagtttgct
aaagccatctatctgctgtatgccaagctcgaagaggattttgggttggcacggcacgct
atggcagtgtatgatagagctacacaagctgtgttaccggaggagcagtatgagatgttt
aatgtgtacataaagagagccgcagagttgtacggagtgacatacacgaggccgatctac
gagaaggccatcgaggttctaaccaatgaccaagcacgggagatgtgtctgcgttttgcc
gacctggagaggaagctgggcgagattgaccgtgccagagccgtgtatgcccactgttca
cagatctgtgaccccaggtctacagcaaacttttggcagacgtggaaagactttgagatc
aaacacggcaatgaagacaccgttcgtgagatgttacgcatcaagagaagtgtgcaggct
atgtacaacacacaggtcaatttcatgtctgcccagatgttggcagtggcttcatccaag
gaaaaccaaggagatgctccagacgtgtcagatgagatgagaaaactggaagagaaggct
cgacaactggctgaggaggccatgaaagaccagtcaaaaccagacaagggcatcttattt
gtcaggagcaacacaacagacgaggagctgggtgagatgaccaaaacaaccaacccagac
gagatcaacatcgacgaagacttctccaccgatgaggacgaggaggttgaagaggtccag
cggcagtctgttcccatggaggtgtttggaggcctagcaacagaagaagactag
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