Dreissena polymorpha (zebra mussel): 127839885
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Entry
127839885 CDS
T08834
Name
(RefSeq) 5'-3' exoribonuclease 1-like
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
dpol
Dreissena polymorpha (zebra mussel)
Pathway
dpol03008
Ribosome biogenesis in eukaryotes
dpol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpol00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
127839885
09123 Folding, sorting and degradation
03018 RNA degradation
127839885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpol03019
]
127839885
03009 Ribosome biogenesis [BR:
dpol03009
]
127839885
03016 Transfer RNA biogenesis [BR:
dpol03016
]
127839885
03036 Chromosome and associated proteins [BR:
dpol03036
]
127839885
Messenger RNA biogenesis [BR:
dpol03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127839885
mRNA degradation factors
5'-3' decay
5' exonucleases
127839885
Ribosome biogenesis [BR:
dpol03009
]
Eukaryotic type
Pre-60S particles
RNases
127839885
Transfer RNA biogenesis [BR:
dpol03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
127839885
Chromosome and associated proteins [BR:
dpol03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127839885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN1_D1
XRN1_D2_D3
SH3_12
Motif
Other DBs
NCBI-GeneID:
127839885
NCBI-ProteinID:
XP_052224237
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All DBs
Position
7:83589825..83641474
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AA seq
1030 aa
AA seq
DB search
MAARMRELLSHSNQLQQFVFENNLERRSVSKWVDTNHEYLDFPSLDDNTLRLLTLGTYQL
KFTGSYIQEYLGSDCNLQLYREMEGLIRVRPQTLEETTFHLLHLSLFREYLDIEFYALRD
TLTDFDYNLENVIDDLVLMGFLVGNDFIPHLPNLDINNDALHLLWRTYMEVLPHCGGYIN
NGGRLNLERFEKYLAELSKFDFDTFSQQAGDLKLRESKKAYDCVTVADDCVSVADDYVSV
ADEYVSVADNFSLFVCLFQMIVCLLQMISHYDCVSVADDFSEKYSDEDTLYNKYKRNYYM
TKMKYEHVTPEVLRDQAEGYVRGIQWILLYYYEGVPSWSWFYPHHYAPYMSDVKDFKDMS
LTFDLGTPFLPFEQLMAVLPAASKDLLPPPYQSLMINDSSPVIDFYPPQFETDLNGKQQD
WEAVVLIPFIDENLLLEAIRKVSHLLTEEDKSRNIHGPHLLYTHSETPGDTYPTSLPGTF
PDIAVNHARLTKKAAFHLASSELRKGLLSGARLDIFYPGFPTLIHIPYKAKLSKEGVKVF
KASSCGYNMMLHVEDDWCSKAIDQVAKEYLGKEVYVNWPHLYEAKVEEVCDNCWSYKYVE
GDKSTKSGTTSPGINRVKQDHLMANKWNKERDSIAERYKDQLGVVVGNTKILLRALPRTG
RKYILSSNGNVTMEKQFGNQPVAFALQATVKVKDLKVHDSSFCQFTSLTDYLPAGCQVFM
LGWPNYGCQGEVLSTDLQSGLVRINLSILKEPELNDVIHNKADHDEQYFQGYELAQRLGI
SSQLFSQLTGSVLITTGVAEVASQQHNPYKVNVGLNLKLTKHQEEVPGFTRFAKGNKWLY
SNKCVEILDEYIKNTYNLKDVQEYIKGLACTNIEKQKIGADFLSERVILALQSETNKVVE
INRLRQWWIEMRIVTVEPHLLYKPMITSGALIPDSSATYELFDRVVNTRQGFTVPFGLRG
TVVGIYLAEVEVNIMYDVLFDEDFAGGIAIRVSRSSQVDQDIVTTGEVTMKGIQVGARTE
QLARDNILGP
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggctgcacgcatgcgagagttgctgagccattcaaaccagcttcagcaatttgtattt
gaaaacaacctggaacggcgaagtgtctccaagtgggttgataccaaccatgagtatctc
gactttccatctctagatgacaacacactgcggttattgactctaggtacttaccagtta
aaattcacaggcagttacatccaagagtacctaggcagtgactgcaatcttcagctgtac
cgagagatggaggggttaataagagtcagaccccagacacttgaagaaaccacattccat
ctcctgcacctgtccctgttccgggagtacctggatattgagttctatgccctccgtgat
acgttgacagacttcgattacaacctggagaatgtgattgatgacttggttctcatgggt
tttttggtgggcaacgacttcataccccacctgcccaacctagatatcaacaatgatgcc
ttgcaccttctgtggaggacctatatggaggtgctgcctcattgtggaggatacattaac
aatggtggaaggctgaacttagaaaggtttgaaaaatacctcgctgaactctcaaagttt
gactttgacacgttctctcagcaggctggggatctcaagttgcgggagtcaaagaaagct
tatgattgtgtgactgttgcagatgattgtgtgtctgttgcagatgattatgtgtctgtt
gcagatgaatatgtgtctgttgcagataatttctcactgtttgtgtgtctgtttcagatg
attgtgtgtctgctgcagatgatttctcactatgattgtgtgtctgttgcagatgatttc
tcagagaaatattcagatgaggacacattgtacaataaatacaagaggaactattacatg
accaagatgaagtatgaacatgtcactcctgaggtactgcgtgaccaagcagaaggctat
gtgagaggcattcagtggattctgctgtattactatgaaggggtgccttcttggagttgg
ttctacccacaccactatgcaccatacatgagtgacgttaaggacttcaaggatatgtcc
ttgacctttgacctgggcaccccgttcctgccatttgagcagctcatggccgtgctgcct
gcagccagtaaagatctcctgccaccgccatatcagagcttgatgatcaatgactcgtct
ccagtgattgatttctacccccctcagtttgagacagatctcaatggaaagcagcaagac
tgggaggctgtcgtgctcatcccctttattgacgagaaccttcttctagaagccatcagg
aaagtgtcccacttgctgacggaggaggataagtctcgtaacatacacggcccccacctg
ctgtacacgcactctgagacccctggtgacacctacccgacctctctacccggcaccttc
ccagacattgcagtcaaccatgccaggttaacgaagaaggctgcgttccaccttgcctct
agtgagctgaggaaggggctgctttcaggggccaggttggatatcttctatccaggcttc
cctaccctcatacacataccttacaaggcaaagctcagcaaggaaggtgtgaaggtgttc
aaggccagtagttgtggttacaacatgatgctgcatgtggaggatgattggtgtagcaag
gctatagaccaggtggcgaaggaatacctcggtaaggaggtctacgtcaactggccccac
ctgtatgaggccaaggtcgaggaggtctgtgataactgctggagttacaagtatgttgag
ggtgacaagtccaccaaatcaggtacgacaagtccaggcattaatcgtgtgaagcaggat
catctgatggccaacaaatggaacaaggagagggattcaatcgctgaaagatacaaggat
cagctgggggtggtggttggcaataccaagattctgctgagagctctccccaggactggc
aggaaatatatcctgtcatcaaatggaaatgtcactatggaaaagcagtttgggaaccag
ccagtggcatttgctttacaagcaacagttaaagttaaggacttgaaagtgcatgactct
agtttctgccagttcacctccctgactgactacctgccggcaggctgccaggtgttcatg
ctgggctggcccaactacggctgccagggagaggtgctaagcactgatctgcagagtggc
ctggtcagaatcaacctctcaatcctcaaggagcctgaattgaatgatgtgatccacaac
aaggcggaccatgatgagcagtacttccaagggtatgagcttgctcagagacttggcatc
agcagccaactgttctctcaactcactggcagtgtattaatcaccaccggagttgctgag
gttgcaagtcaacagcacaacccttacaaagtaaatgtgggtttgaacttgaagttaacg
aaacaccaggaggaggtaccaggcttcaccaggtttgcaaaagggaacaagtggctctac
tctaataaatgtgtagagattctcgatgagtacataaagaacacctacaacttgaaggat
gtacaggagtacatcaagggactggcatgcacgaacattgaaaaacagaagataggggcc
gacttcttgtctgagagggtgatactggccctgcagagtgagaccaacaaggttgtggag
ataaacagactacgccagtggtggattgaaatgaggattgtgacagtggagcctcacctt
ctgtataagccgatgattacaagtggggctctgattcctgactccagcgccacctacgag
ctgtttgatcgggtcgtaaacacgcgccagggattcacagtaccttttggactccgtggt
acggttgtgggcatttatttagcagaggtggaagtgaacataatgtacgacgtgctgttt
gatgaagattttgctggtggtatcgctatcagggtcagcagatccagccaggtagatcag
gatatcgtgacaacaggggaggtaacaatgaagggaatacaggtcggggctcgtacagag
caactggccagagacaatattcttggcccgtaa
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