Dreissena polymorpha (zebra mussel): 127847194
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Entry
127847194 CDS
T08834
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
dpol
Dreissena polymorpha (zebra mussel)
Pathway
dpol04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dpol00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
127847194
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
dpol00536
]
127847194
Glycosaminoglycan binding proteins [BR:
dpol00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127847194
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Endostatin
Fz
Ldl_recept_a
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
127847194
NCBI-ProteinID:
XP_052234880
LinkDB
All DBs
Position
10:33521064..33668992
Genome browser
AA seq
1578 aa
AA seq
DB search
MTQRALITVACLVIGLIGNTLAQKRRGDTGSELQKSKEKSVGRCEPIKVPMCQGLPYNET
RMPNLLNHTNQEDAGLEYHQFVPLVKLQCSKHLQFFLCTLYAPMCTEHVESIPPCRSLCV
KALRTGCQTLMNKFGFMWPDRFNCDHFPENGLCIAEDMTDQQMITTKPLGCKGGEFLCGS
GECIDSSYRCDANPMDCSDGSDEDNCPGSRLCVEGGRPCVDDSACLLASQFCDDIPQCND
GSDEWPSRCQKNGVVDLLVMLGTGDAARGIDFTTFAKEGPVFTLRPVQGVTISEPVIKYI
SEPLSDFHIMVVLKLQAPDAMLFSIESPNHLKSLGVQLQSVMEGGSRRTKVILYHTPNTR
TQSRSSFSHVTIPDILNRWVKLDIQVKRSSLSVYLDCQPQADDDLIGGGGPLSFEDGSTL
YMGRSGFIPHNEFKGSLAQLTIYTQLEKIPRDTLTKCNEIEAIGKAGDDEVFAGSGSGDG
SDITVDIDEITEAVPKQSMKGEQGEPGPKGEKGDQGPPGIPSPPQPPPDPSVLLGMKGEK
GDRGDMGIPGQPGKDGSKGDRGDVGIPGTQGPQGIQGHPGLAVVGQKGEPGLPGLPAEPR
PYDEEPGPKGEPGMPGLPGKDGKDGVPGREGPVGPQGLPGQGLAGVPGRDGLPGLMGPQG
PPGPPGPPGPAHTQPISLIADDDLFEGSGEVRPAVGGVKGDKGDRGVPGPQGPPGIAGPA
GIPGVAGARGPQGETGPQGPPGAPGVFEGDPEDLRGDPGSPGLQGPEGKPGLPGPAGEPG
IPGINGMKGSRGDDGLQGEPGVAGVMGPMGPEGPSGPAGKPGVDGKDGRPGPPGPQGPPG
QVVEVSGGSVAGPMGPEGPVGPRGLPGPAGDKGVPGPQGPTGVRGERGEQGLPGPLGFKG
ERGDVGEPGSAGQPGERGAPGMDGLPGSQGAAGLPGNHGMKGTKGDQGETGLPGASIVGA
TGAPGPSGPPGPPGPPGPPGHLSGNAGDLIFDGEGSGEMNSMPGLPGQKGEKGDPGSSGV
AGEQGLPGVDGLPGPKGERGLPGVDGLTGPQGERGLPGVDGMPGKPGKDGLPGPDGEPGI
NGVMGPKGDKGDTGPVGPVGPPGPPAGPGNLVSGGAVVTGEPGKPGPMGPQGPIGPTGKQ
GEIGYPGFPGPRGVRGFAGRKGDPGVGTPGRKGEPGQTGAPGLPGTATGAGGKGDKGDPG
NDGKPGRDGSKGEAGARGPPGLPGIQSDDGGREIVGPEGPKGERGPPGYPGQNGLPGRDG
VGERGPMGPPGPPGDATGLRGPPGPPGAPGLPGTGSGSGGDGAATPVQFADESELQRAAR
KIPIGTLAFALNTEQVYIRVSQGWRSITLGNDLIRLLPETPVTTDNVLPFRKVIVPPTLP
PTTTPPSRVPENQSDGRITGSPRLHLVALNNPQNGHMRGIRGADSQCHREARESGMNGTF
RAFLSSSDQNLDSLVYYQLDRSVPIVNSKDELLFNSWNDMLNGGGGAFNHGASIYSFNGK
NVKDDRQWPMKVLWHGSDRKGNRMEDKSCRGWSSHSRYSSGLGSSLMDGKMMDMDEYSCN
NAFVILCVEITSQQKLRK
NT seq
4737 nt
NT seq
+upstream
nt +downstream
nt
atgacacagagggcgctgataacagtggcctgcctggtaattgggctaattggaaacacc
ttggcacaaaaaagaagaggggacactggcagtgaattacaaaagagcaaggaaaaaagt
gttggaaggtgtgagccaataaaagtccccatgtgtcagggtttaccgtataacgagact
cgtatgccaaatttactgaaccacacaaatcaggaggatgctgggttggagtatcatcaa
ttcgtaccgctggtcaaactacagtgcagtaaacatctgcaatttttcctgtgcaccttg
tatgctccgatgtgcacagaacatgtggaatccatcccaccgtgccgtagtctgtgcgtg
aaggcgcttcgaactggatgtcaaacgctgatgaacaaattcgggtttatgtggccagat
agattcaattgtgatcattttccagagaatggtctttgtattgcagaagatatgactgat
caacaaatgatcactaccaagccactaggttgtaagggtggcgaatttctatgtggaagc
ggagaatgtatagacagtagttatagatgtgatgcaaatccaatggattgttcggacggt
tccgatgaagacaactgtcctgggtctagactttgcgtagaagggggtcgaccatgtgtc
gacgattctgcgtgtcttttggcctcgcagttttgcgatgacatcccacaatgtaatgat
ggcagtgatgaatggccgtcaagatgccagaagaatggcgtagtcgacctacttgtgatg
ttaggcacaggagacgcagcccgtgggatagatttcacaacttttgccaaagagggccct
gttttcacacttcggcccgttcagggggtcaccattagcgaacctgtcattaaatacatc
agcgaacctctaagtgactttcacataatggtcgttttaaaacttcaggcgccagacgcc
atgcttttttccatagaaagtccaaaccatttaaaatctttaggcgtgcagttacagtct
gtgatggaaggtgggagtcgtaggacgaaggtgattctatatcacacaccgaacacgagg
acccagtccaggtcgagttttagtcatgtgactataccagatattcttaatagatgggtg
aaactagatattcaagtgaaaaggtcatcattgagcgtgtacttggattgccaacctcag
gccgatgatgatttgattggtgggggtggtccactttcatttgaggatggatccactctg
tatatggggcgatcaggttttattcctcacaacgaatttaagggaagtctagcacagcta
acgatctacacccaattggaaaaaataccacgagacactctgacaaaatgtaatgaaatc
gaggcaataggaaaggcgggggatgatgaagtgtttgcaggatcgggatccggcgatggc
tcagatatcacggtggacattgacgaaatcactgaagcggtacccaagcaaagcatgaaa
ggagagcaaggagagccggggcccaagggtgagaagggagaccagggtccgcccggaata
ccctccccccctcaacctccaccagacccgagtgtcctgttggggatgaagggggaaaaa
ggggacagaggggacatggggatcccaggtcagcctggcaaagatgggtccaaaggggac
aggggagatgtgggaattccagggacccagggaccccaaggaatacagggacatcctggt
ctcgcagttgtaggacagaaaggcgagccaggattgcccggactgcctgctgaaccacgc
ccgtacgatgaagaacccggacctaaaggagagcccgggatgccaggacttcctggcaaa
gatggaaaagatggagttccgggtcgagagggtccagtgggaccacaaggactgccgggc
caaggccttgcaggagtgccaggaagggatggtctaccaggcttaatgggtccccagggt
ccaccaggcccccctggaccaccaggacctgctcatacccagcccatatccctgatcgca
gatgatgacctttttgaggggtcaggagaggtcaggcccgcggttggcggggtcaaaggt
gataaaggtgatcgcggtgtgcccgggccccagggtccaccaggtattgcaggccctgct
ggaattccgggtgtggctggagcaagagggccccagggtgagactggaccccagggacct
cctggagccccaggggtgtttgaaggtgacccagaagacctgaggggagaccctggatcc
cctggcttacagggtcctgagggaaaaccaggcctgccagggccagcaggggagcctggt
attccaggtatcaacggcatgaagggatcacggggtgatgacggattgcaaggagaaccg
ggtgttgcaggagttatgggcccaatgggacccgagggaccatccgggcctgctggaaaa
ccaggtgttgatggcaaagatggacgacctggaccccctggaccccagggtcctcccgga
caggtcgttgaggtatcgggcgggtcagttgctggtcccatgggacccgaaggcccagtg
ggtcctcgaggcttgcctggacctgcaggagataagggtgtgcctggcccacaggggcca
acaggggttaggggagagaggggagagcaggggctgcctgggccacttggcttcaaggga
gaaaggggagatgttggagagcccgggtctgcgggccagccaggagagaggggcgcgcca
gggatggacggtctgccaggcagtcaaggagccgctgggttacctggcaaccatggaatg
aagggaaccaaaggtgatcaaggtgaaactggattacccggagcatcaattgtgggagca
accggggcacctggtccgtccggcccaccgggtccccctggccctccaggaccacccggg
cacttgtccggaaatgcaggtgatttgatcttcgacggggaaggaagtggtgagatgaac
agtatgcccggattgcctggacagaaaggcgagaaaggtgatcctggatcaagtggtgtt
gccggtgaacaggggctgcctggagttgatgggttgccgggacctaaaggtgaaagaggg
ctgcccggagttgatggtttgacgggacctcaaggtgaacgagggctgcccggagttgat
ggtatgcctggtaagccgggtaaagatggtttaccgggaccggacggagaaccaggcatc
aacggtgtcatgggccctaaaggagacaagggagatacgggacctgttggccccgtggga
ccccctggtccaccggcgggtcctggaaatctggtttctgggggggcagtagtcacgggc
gagcctggaaaaccgggacctatgggaccacagggaccaataggaccaacgggaaaacag
ggcgaaatcggttaccctggattcccgggtccaagaggggtcaggggcttcgcaggtcgt
aagggtgatcctggagtcggaactccgggccggaaaggagagcctggacaaacaggtgca
cctggattgcctgggactgctactggcgcgggtggcaagggagataagggagaccctggt
aatgatggaaaacctggacgggatggatctaagggagaagcaggtgctaggggacctccg
ggattgcctggaatccaaagtgatgacggtggaagggaaatcgtggggcctgagggacct
aagggagaaaggggtccacctggatacccgggtcagaacggtctgccaggtcgggatggt
gtgggagagagaggacccatggggccaccgggaccacctggagatgcgactggactgcgg
ggcccaccagggccacccggagcacctggtctgcccggaacgggatctgggtctggaggt
gacggagctgctaccccggttcagtttgctgacgagtctgagctccagagagcagctcgc
aaaattccaattggaacgctggcctttgcactgaacacagaacaagtgtatatacgcgtt
tcccagggttggagaagtataacgcttggaaatgacttaattcgcttgctgccagaaaca
ccagtgaccactgacaatgtcctcccatttagaaaggtcattgttccaccaaccttgcct
cctactactacgcccccttcgcgagtaccagaaaaccagtctgatggaagaattacagga
tcaccaaggcttcaccttgttgcactgaacaatccccaaaacggccacatgcgtggaatc
cggggcgcggacagtcagtgccatagagaggcccgcgaatctgggatgaacggaactttc
cgcgcgttcctgtcttcgtctgaccagaatttggactctcttgtgtactatcagctggac
cgaagtgttcccattgtcaattcaaaggatgagttgctgttcaactcctggaatgacatg
cttaatggcgggggcggggctttcaaccacggcgcctccatctactccttcaacgggaaa
aacgtgaaggatgatcgtcagtggccaatgaaggttctctggcacggctctgacaggaag
ggtaaccgcatggaggataagtcgtgtcgaggctggagctcgcactctcggtattcaagc
ggcctgggcagctctctcatggatggcaagatgatggatatggacgagtacagctgtaac
aacgccttcgtcatcctgtgtgtggagatcaccagtcaacagaagttgcggaaatga
DBGET
integrated database retrieval system
