Dreissena polymorpha (zebra mussel): 127852585
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Entry
127852585 CDS
T08834
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9-like isoform X1
KO
K18735
protein SMG9
Organism
dpol
Dreissena polymorpha (zebra mussel)
Brite
KEGG Orthology (KO) [BR:
dpol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpol03019
]
127852585
Messenger RNA biogenesis [BR:
dpol03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
127852585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
MMR_HSR1
DUF5560
NB-ARC
GBP
Smg8_Smg9
AAA_33
AAA_18
Dynamin_N
Motif
Other DBs
NCBI-GeneID:
127852585
NCBI-ProteinID:
XP_052242499
LinkDB
All DBs
Position
1:complement(140182570..140229492)
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AA seq
473 aa
AA seq
DB search
MSSDMIERDSRRGGAGGRRRRPRGGSSTTGIGRKDYEVDTPPARPTIILAKHEDRDSPAV
SQTSSNRDSTSTSPAPSSQLPEKPVMVLKSRDEGSRTLTSTSAITNIPAGTMQGETPPQT
TFLQRTIESTSKLSLPLELSRCVKLIDDQSQWCEQASECLLEQTDFLVVGVVGLQGSGKS
TVLSLLAGNTEADPLRNYIFPAQTREVREECGHMTNGIDIHVTSQRVIFLDTQPLLSASV
LDQLINNDKKIPPEFTTSENFAEIQCLQHVMFLLTVCNVILVVQDWFTDTALLDFLKTAE
MLKPSTPPSPGHDGTSTADDQPDFFPHVVFLQNKAKREDFTVENFTAMQKTLSTVLGNSK
LKMKGDVAMTTGRQSFSLNPAFVKSELNMFLLPRFDANKRESTDQLQPQVREYQGHPSFQ
TLINSLRGQILSMPREQQTHTTLTEKNWFHYAARMWDSIKKSQILADYNRLLP
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagatatgattgagcgcgactcacgacgaggtggtgctggtggcagacgaaga
aggccacgcggcggtagctctacaacgggcattggaagaaaagactatgaagttgacact
ccaccagcccggcctacaatcatcctggccaagcatgaagacagggactcgcctgctgtt
agccagacttctagcaatagagattccacttcaacatctcctgccccatcttcccagcta
ccagagaagccagtgatggttctcaagtccagggatgaggggtcacgaacactgacctct
acctcagccattaccaacatcccagctggaactatgcaaggggagacaccaccccagaca
actttcctgcagaggaccattgaaagtaccagcaagctgtccctaccactggagctatcc
aggtgtgtcaagctgatagatgatcagagtcagtggtgtgaacaggccagtgagtgcttg
ttagagcaaacagatttccttgttgtgggggtggtggggctgcaagggtcaggcaagtcc
actgtcctctccctgcttgcgggtaacacagaggctgacccacttaggaactacattttt
cctgctcaaacaagggaggttagagaggagtgtggccacatgacaaatggtatagacatc
catgtcacctcacaaagagttatcttccttgatacacagccattgttgagtgcttcagtg
ctggaccagcttatcaacaatgacaagaaaattcccccagaattcacaacatcagagaac
tttgctgaaattcagtgtctgcagcacgtgatgttcctgctgacagtgtgtaacgtgata
ctcgtggtccaggactggttcactgacacggcgctgctagacttcctcaagaccgcggag
atgctcaaaccctccacccctccctcccctggtcatgacggaacatccaccgctgacgat
cagccggacttcttcccacatgttgtgttccttcaaaacaaggcaaagcgtgaggacttt
actgtggagaactttactgccatgcagaagacactgtctacagtactaggcaattccaag
ctcaaaatgaaaggagatgttgctatgaccactggtcgacaatcttttagtctgaatcct
gcctttgtaaagtctgaacttaacatgttccttctgccacgatttgatgcaaacaaaaga
gaaagtacagaccagctgcagccccaggtgcgcgagtaccagggccaccccagcttccag
accttgatcaactccctgaggggccagatcctcagcatgcccagagagcagcaaacgcac
accacactcactgagaagaactggttccactacgctgctcggatgtgggactccatcaag
aaatcacagatactggcagactacaacagacttttgccttga
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