Dreissena polymorpha (zebra mussel): 127859973
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Entry
127859973 CDS
T08834
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dpol
Dreissena polymorpha (zebra mussel)
Brite
KEGG Orthology (KO) [BR:
dpol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dpol03016
]
127859973
Enzymes [BR:
dpol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
127859973
Transfer RNA biogenesis [BR:
dpol03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
127859973
Prokaryotic type
tRNA splicing ligases
127859973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
127859973
NCBI-ProteinID:
XP_052253597
LinkDB
All DBs
Position
1:complement(167127800..167181432)
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AA seq
506 aa
AA seq
DB search
MVVRTYQDELKYLERINSVTWRIKKGFVENMNVEGMFFVNEFLEKLMFDELKQSCRSGGF
GGFLPGMKQIGNVAALPGIVGKSIGLPDVHSGYGFAIGNMAAFDMADPNSVISPGGVGFD
INCGVRLLRTNLTEKDVLPVREQLAQSLFDHIPVGVGSKGIIPMNAKDLEECLEMGMDWS
LREGYSWAEDKEHCEEYGRMLQADPSKVSPRAKKRGLPQLGTLGAGNHYTEIQVVDEIFD
EYAAKKMGIEFKGQICVMIHCGSRGLGHQVATDSLVVMEKVMKRDNILTNDRQLACAKIN
SPEGQDYLKGMASAANYAWVNRSSMTFLARQAFAKMFESTPDDLDMHIIYDVSHNIAKVE
EHFLDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
NETFGTTCHGAGRALSRAKSRRNLDYMDVLNALEEKGISIRVASPKLVMEEAPESYKNVT
DVVDTCHIAGISKKAIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtggtaagaacatatcaagatgaactcaaatatctggagaggatcaactcggtgaca
tggcgcatcaagaaaggctttgtggaaaacatgaatgtggaaggcatgttcttcgtgaat
gagttcctggagaagttgatgtttgatgagctgaagcagtcttgtcgttctgggggcttc
gggggcttcctgcctggcatgaagcagattggcaatgtggcggcactccctgggatagtc
gggaaatctattggtttaccagatgtgcatagtgggtacggatttgcaattggaaacatg
gcagcctttgacatggcagatcccaactctgtcatttcgccaggtggggttggctttgac
ataaactgtggagtgcgactcctgcggaccaacctcacagagaaagacgtgctgccagtg
agggaacaactggctcagagcctgtttgatcatatccctgtaggcgtgggatccaagggg
atcatcccaatgaatgccaaagacttggaggagtgtttggagatgggaatggactggtcc
ctacgggaaggttacagctgggctgaagacaaggagcactgcgaggagtacgggcgcatg
ttgcaggcggacccttccaaagttagccctcgggcaaagaaaaggggccttccacagctg
ggcacactgggagctggaaaccactatacggagattcaggtggtagatgagatattcgat
gagtatgcggccaagaagatgggaattgagttcaagggacagatctgtgtgatgatccac
tgcggcagtagagggctcggccaccaggtggcaacagattccctggttgtcatggagaaa
gtgatgaagcgtgacaacatcctcactaacgaccgtcagctagcctgcgcaaagattaac
tctccagagggtcaggactacctcaagggcatggcgtcagccgctaactacgcctgggtc
aataggtcaagtatgaccttcctggcaagacaggcatttgcaaagatgtttgaatcgacg
ccagatgaccttgacatgcacatcatctacgacgtgtctcacaacatcgccaaagtggaa
gaacatttcctggacggcaagcaaaagacgctcttggttcacaggaagggatctacacgg
gctttcccgccacaccatccgctcattcctgtggattatcagttgacaggtcagcctgtg
ttgataggcggcaccatgggcacatgcagttacgttctgacaggaacggagcaaggaatg
aacgagacctttggcacaacctgtcatggagctggtcgagcattatcgagggccaagtcg
aggcgtaaccttgactacatggatgtgttgaatgctctggaggagaagggtatcagcatc
agagtggcatcaccaaaactagtcatggaagaggctccagagtcctataaaaatgtgaca
gacgtggtggacacatgtcacatagcgggcataagtaagaaggctataaaattacgacct
attgctgtcatcaaagggtga
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