Dreissena polymorpha (zebra mussel): 127864348
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Entry
127864348 CDS
T08834
Name
(RefSeq) LOW QUALITY PROTEIN: RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dpol
Dreissena polymorpha (zebra mussel)
Brite
KEGG Orthology (KO) [BR:
dpol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dpol03016
]
127864348
Enzymes [BR:
dpol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
127864348
Transfer RNA biogenesis [BR:
dpol03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
127864348
Prokaryotic type
tRNA splicing ligases
127864348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
127864348
NCBI-ProteinID:
XP_052259955
LinkDB
All DBs
Position
1:complement(167972917..168008682)
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AA seq
502 aa
AA seq
DB search
MEQYSRQSNIKIDGHRCFFMRLSCADLLVEGMFFVNEFLEKLMFDELXQSCRSGGFGGFL
PGMKQIGNVAALPGIVGKSIGLPDVHSGYGFAIGNMAAFDMADPNSVISPGGVGFDINCG
VRLLRTNLTEKDVLPVREQLAQSLFDHIPVGVGSKGIIPMNAKDLEECLEMGMDWSLREG
YSWAEDKEHCEEYGRMLQADPSKVSPRAKKRGLPQLGTLGAGNHYTEIQVVDEIFDEYAA
KKMGIEFKGQICVMIHCGSRGLGHQVATDSLVVMEKVMKRDNILTNDRQLACAKINSPEG
QDYLKGMASAANYAWVNRSSMTFLARQAFAKMFESTPDDLDMHIIYDVSHNIAKVEEHFL
DGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMNETF
GTTCHGAGRALSRAKSRRNLDYMDVLNALEEKGISIRVASPKLVMEEAPESYKNVTDVVD
TCHIAGISKKAIKLRPIAVIKG
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atggaacagtacagccggcaaagcaacatcaagatagatggtcatcgctgcttcttcatg
cgcctgtcgtgtgctgacctgcttgtggaaggcatgttcttcgtgaatgagttcctggag
aagttgatgtttgatgagctgnagcagtcttgtcgttctgggggcttcgggggcttcctg
cctggcatgaagcagattggcaatgtggcggcactccctgggatagtcgggaaatctatt
ggtttaccagatgtgcatagtgggtacggatttgcaattggaaacatggcagcctttgac
atggcagatcccaactctgtcatttcgccaggtggggttggctttgacataaactgtgga
gtgcgactcctgcggaccaacctcacagagaaagacgtgctgccagtgagggaacaactg
gctcagagcctgtttgatcatatccctgtaggcgtgggatccaaggggatcatcccaatg
aatgccaaagacttggaggagtgtttggagatgggaatggactggtccctaagggaaggt
tacagctgggctgaagacaaggagcactgtgaggagtacgggcgcatgttgcaggcggac
ccttccaaagtcagccctcgggcaaagaaaaggggccttccacagctgggcacactggga
gctggaaaccactatacggagattcaggtggtagatgagatattcgatgagtatgcagcc
aagaagatgggaattgagttcaagggacagatctgtgtgatgatccactgcggcagtaga
gggctcggccaccaggtggcaacagattccctggttgtcatggagaaagtgatgaagcgt
gacaacatcctcacgaacgaccgtcagctagcctgcgcaaagattaactctccagagggt
caggactacctcaagggcatggcgtcagccgctaactacgcctgggtcaataggtcaagt
atgaccttcctggcaagacaggcatttgcaaagatgtttgaatcgacgccagatgacctt
gacatgcacatcatctacgacgtgtctcacaacatcgccaaagtggaagaacatttcctg
gacggcaagcaaaagacgctcttggttcacaggaagggatctacacgggccttcccgcca
caccatccgctcattcctgtggattatcagttgacaggtcagcctgtgttgataggcggc
accatgggcacatgcagttacgttctgacaggaacggagcaaggaatgaacgagaccttt
ggcacaacctgtcatggggctggtcgagcattatcgagggccaagtcgaggcgtaacctt
gactacatggatgtgttgaacgctctggaggagaagggtatcagcatcagagtggcatca
ccaaaactggtcatggaagaggctccagagtcctataaaaatgtgacagatgtggtggac
acatgtcacatagcgggcataagtaagaaggctataaaattacgacctattgctgtcatc
aaagggtga
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