Dreissena polymorpha (zebra mussel): 127870862
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Entry
127870862 CDS
T08834
Name
(RefSeq) 5'-3' exoribonuclease 2-like isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
dpol
Dreissena polymorpha (zebra mussel)
Pathway
dpol03008
Ribosome biogenesis in eukaryotes
dpol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpol00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
127870862
09123 Folding, sorting and degradation
03018 RNA degradation
127870862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpol03021
]
127870862
03019 Messenger RNA biogenesis [BR:
dpol03019
]
127870862
03009 Ribosome biogenesis [BR:
dpol03009
]
127870862
03016 Transfer RNA biogenesis [BR:
dpol03016
]
127870862
Transcription machinery [BR:
dpol03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127870862
Messenger RNA biogenesis [BR:
dpol03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
127870862
Ribosome biogenesis [BR:
dpol03009
]
Eukaryotic type
Pre-60S particles
RNases
127870862
Transfer RNA biogenesis [BR:
dpol03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
127870862
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
DUF8363
DUF5669
Motif
Other DBs
NCBI-GeneID:
127870862
NCBI-ProteinID:
XP_052269363
LinkDB
All DBs
Position
3:106145533..106220049
Genome browser
AA seq
1022 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIVVHCVEDKPKEINGVKVPVDTSAKNPNDIEFDNLYLDMNGIIH
PCTHPEDKPAPKNEQEMMILIFEYIDRIFSIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKESVESAEAIARMREELQSKGMEVPPEKPASEKFDSNCITPGTPFMFRLADCLRFYIH
DRMNNDPGWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTSHCLCGADADLIML
GLATHEVNFTIIREEFKPNKPRPCALCGQIGHELKDCQGLPKEKFGEHDQLSAPIFEETP
FIFLRLNVLREYLERELLMNGLPFKYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVKLYKNAVRKTGGYLTDSGVVSLERVQLIMQDLGEVEDEIFKKRRTDDMEFKRRNKE
RRRKNRRIDDKPRYVPGGLLKPQALGGYGQGGGGRGGGPGRPGLGSTGAAIRQEAYEHRM
QKFSTSNSDRDMANLDAAQALKAMMNTDGDGRGEKRKSKEDSDSESEPDDEVKLWEDGWK
DRYYKSKFDVEKDDIAFRHNVANHYVRGLCWVLRYYYQGCASWKWYFPYHYAPFASDFVN
VGSLSNAFEKDTEPFKPLEQLMGVFPAGSKQHVPPTWQELMTNPRSPIIDFYPVDFKIDL
NGKKYAWQGVALLPFVDETRLWKALDTVYPDLTDAELKRNIRGNDRLFVSQSHATHAFLE
AIYEGGAMDKTKLELNPKQTQGMAGKVWADEFVNLTGETVPSPLPQLTDLQDNRVISVQF
EDPQYDRDFLFPAVILPGAKMTDRVLKPEDFDRFQRGGQYRPQLGFQPNSGYRGHKDMGP
ANRMIRSNIACDEESVSGVSVPPPSGGYGGYQQNRGGRDGYSGGGGYGGGGYGARQQSGW
MPPVLPNIQFYAQNSYGGNSGYGGQNRGGYSNNSYNSAGGGAGGYGNQSGGYGNRNMQSQ
SSGYSNYGASNYNQGSYDGRSSGASYGGSYSTSSSSYGAQPRDRQDNRNNTSKFPLPPNY
RR
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccagcattttttcgctggctgagtaggaagtatccgtcaattgttgtgcac
tgtgtggaagataagccaaaggaaatcaatggagtgaaggttccagtggataccagcgct
aagaatccgaatgatatcgagtttgataatctctacctggacatgaatggtatcattcac
ccctgcactcaccctgaggacaaacctgccccaaagaatgagcaggagatgatgattctg
atctttgaatacatagacagaatcttctctattgtgagaccaaggcgtgtgctctacatg
gccattgatggagtggctcctagagccaagatgaatcagcagagaagccgtcgtttcaga
gcttcaaaggaatctgtagaatctgcagaggcaatagcgcgaatgagggaggaattacag
tcgaaggggatggaagtaccgccagagaaacccgcctctgagaagtttgacagtaactgc
atcactccaggtaccccattcatgttccgcctggctgactgcctgcgattctacatccat
gaccgcatgaacaacgaccctggctggaagggcatcaaggtcatcctgtcggatgctaat
gtgcccggtgagggagagcataagatcatggactacatcaggaaacagagagcccagcct
gatcatgaccccaacaccagccactgtctttgtggagcagacgccgatttgatcatgctt
ggtttggctacccatgaggtcaacttcaccatcatccgagaggagttcaagcctaataaa
ccccgcccatgtgccctctgtggacagataggacatgagctgaaagactgccaaggcctt
ccaaaggagaaatttggtgaacatgatcagctgtcggccccaatttttgaagagactcct
ttcatttttttgcgactgaacgtgctgcgggaatacctcgaaagagaactgctcatgaat
ggtctcccttttaaatacagctttgaacgtgccttggacgactgggttttcatgtgtttc
tttgttggcaatgacttcctccctcacttgccctcactggagatcagggaaggggccatt
gacaggctggtgaagctgtacaaaaatgctgtccgtaaaacagggggttatttaacagac
agtggggttgtgtctctggaaagagtccagctgatcatgcaagacctgggagaagttgag
gatgaaattttcaaaaagcgcagaacagatgacatggagttcaagcgaaggaataaggaa
agacgcaggaaaaacagacggattgatgacaagcctcgctatgtgccaggaggcctactg
aagcctcaggccctaggggggtatgggcaggggggtgggggacggggcggtggtcctgga
aggccggggctgggatccacgggtgcagccattcgtcaggaagcgtatgagcatcgcatg
cagaagttctccacatccaacagtgatagggacatggccaacctggacgctgcccaggcc
ctcaaggcaatgatgaacaccgatggtgatgggagaggggagaaaagaaaaagcaaagag
gatagtgacagtgaatctgagcctgatgatgaagtcaaactgtgggaggatggctggaaa
gacagatactacaaaagcaagtttgatgtggagaaggatgacattgccttcaggcataat
gtggccaaccactatgtgcgcggcctttgctgggtactacggtactactaccagggctgt
gcctcgtggaagtggtacttcccataccactacgcaccgttcgcttcagactttgtcaac
gttggttcactttctaatgcgtttgagaaggacacagagccttttaagcccctggagcag
ctgatgggggtgttccctgcgggcagcaagcagcacgtcccaccaacctggcaggagctc
atgactaacccccggtcacccatcatagacttctaccccgtcgatttcaagatcgacctc
aacggcaagaagtatgcttggcagggtgtggccctgctaccgtttgtagatgagacgcgt
ctttggaaggcattagacactgtatatccagatctcactgatgcagaattaaagcggaat
atccgtggtaatgaccgcctgtttgtgagccagtctcatgcgacacatgctttcctggaa
gctatttatgagggcggggccatggataaaactaaactggagttgaatcccaagcagact
caaggcatggcaggcaaggtctgggcagacgagtttgtgaaccttacaggagagacagtg
ccaagcccgctgccacagttgacagatctccaggacaaccgtgttataagtgtccagttt
gaggacccccagtatgaccgggacttcctgttcccagcagtcatcctgccaggggccaag
atgacagaccgggtgttgaaaccagaggactttgatcgtttccaaagagggggtcagtac
aggccccagttggggttccagcccaacagtggatacaggggccacaaggacatggggcca
gccaacaggatgatcaggtcaaacatagcatgtgatgaagaatcagtgtcaggggtatcg
gtccctcctccatcgggtggatatgggggctaccagcaaaacagaggtggtcgcgatggt
tacagcggtggtgggggctatggtggtggaggttatggcgctaggcagcagtctggctgg
atgcctcctgtattaccaaacatccagttttatgctcaaaacagctatggtggaaacagt
ggctatggtggccaaaacagaggaggctacagcaacaacagttacaatagtgctggtggt
ggggctggtggctatggcaaccagtcaggaggctatggcaaccgcaacatgcagtctcag
tccagtgggtacagcaactatggtgcatcaaactacaatcagggttcctatgatggccgc
agtagtggcgccagttatgggggctcatattcaacgtcgtcatcatcatatggggctcag
ccaagggatcggcaggataacaggaataacacctcgaagtttcctcttccaccaaactac
agaaggtga
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