Dreissena polymorpha (Zebra mussel): 127871079
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Entry
127871079 CDS
T08834
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
dpol
Dreissena polymorpha (Zebra mussel)
Pathway
dpol03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpol00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127871079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dpol03041
]
127871079
03009 Ribosome biogenesis [BR:
dpol03009
]
127871079
Enzymes [BR:
dpol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127871079
Spliceosome [BR:
dpol03041
]
Complex A
U2 snRNP components
U2 related factors
127871079
Complex B
127871079
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
127871079
Ribosome biogenesis [BR:
dpol03009
]
Eukaryotic type
90S particles
Helicases
127871079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_19
nSTAND3
AAA_22
SRP54
Flavi_DEAD
ABC_tran
AAA_7
AAA_25
T2SSE
NACHT
TsaE
Motif
Other DBs
NCBI-GeneID:
127871079
NCBI-ProteinID:
XP_052269689
LinkDB
All DBs
Position
3:complement(113304674..113332880)
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AA seq
788 aa
AA seq
DB search
MSKRHRIDVGDSYRKREDGDYKRERSRSPHEKKPEKAQSIFEQFNIPKPQLQINPFTGLP
HTPRYLQLLVKRKTLPVWEYKEKFIEILNKHQTLVLVGETGSGKTTQIPQWCLDWVRVRY
QKKGVACTQPRRVAAMSVAQRVSEEMDVGLGQEVGYSIRFEDCTSTKTILKYMTDGMLLR
EAMSDPLLENYGVVLLDEAHERTLATDILMGLLKEVAKQRTDLKIIIMSATLDAGKFQNY
FDNAPLMSVPGRTHPVEIFYTPEPERDYLEAAIRTVLQIHMCEEIDGDILLFLTGQEEID
EACKRIAREVENLGPDVGDMKCIPLYSTLPPNLQQRIFEPPPPNKASGAIGRKVVVSTNI
AETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTKPGKCFR
LYTEKAFKQEMQENTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELL
NYLAALDDNGDLTELGSMMAEFPLDPQLAKMVIASTDFSCSNEILSITAMLSVPQCFVRP
TELRKVADECKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFINFRSLKSADNVRQQ
LARIMDRFNLKRSSTDFTSRDYYINIRKALVCGFFMQIAHLERTGHYLTVKDNQIVQLHP
STCLDHKPEWVLYNEFVLTTKNYIRTVTDVKPEWLIQIAPQYYEMTNFPLCCRLIQIAPQ
YYEMSNFPLCCRLIQIAPQYYEMSNFPLCCRLIQIAPQYYEMSNFPLCEAKRQLERIIAK
LQSKGYTE
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgacaccgcattgacgtcggggattcctatagaaaaagggaagatggggat
tacaagcgtgaaaggtcccgttccccccatgagaagaaaccagagaaggcacagtcaata
ttcgaacagttcaacattcctaagccccaactgcagataaatcctttcacaggtttgccg
cacactccaagatacttacaactgttggtcaaacgaaaaactctgcccgtatgggagtat
aaggaaaagtttattgagattttaaacaaacatcagaccctggtccttgttggtgaaaca
ggctctgggaaaactacacagatccctcaatggtgcctggactgggtgagagtgcgctac
cagaagaagggcgtggcctgtacccagccccgcagggtggcagccatgtcagtggcgcag
cgtgtgtccgaggaaatggacgtggggctgggacaggaggtgggctatagcatccgcttt
gaggactgcacatcgaccaagaccatactgaagtacatgactgacggtatgttgctacgt
gaggccatgtcagaccctctgctagagaactatggtgtggtactgctcgacgaagcccac
gaacggacgctcgctactgacattctgatgggcttgctgaaagaggtggccaagcaaagg
acggatcttaagatcataataatgagtgccacactggatgctggcaagttccagaactac
ttcgacaacgccccgctgatgagcgttcccgggcgaacccatcccgtggagatattctac
acccctgagcccgagagggactacctggaggcggccatcaggactgtgctgcagatacac
atgtgtgaggagatagacggtgacatcctgctctttctcacgggacaggaggaaattgat
gaagcctgcaagaggattgcaagagaagttgaaaacctgggccccgatgtgggcgacatg
aagtgcatacccctctactccacactgccccctaaccttcaacagcgcatctttgagcct
ccaccccctaataaagccagcggggcgattggtcggaaggtggtcgtgtcgacaaacatt
gcagagacctcccttaccatcgatggagttgtgtttgtgattgatcctggctttgccaaa
cagaaggtgtacaatcccaggattcgtgtcgagtccctcctcgtcacagccatcagtaag
gccagtgcccaacaacgggcaggtcgcgccggtcgtaccaagcctgggaaatgtttccgt
ctctacacggagaaggctttcaagcaagaaatgcaggagaacacataccctgaaatcctt
cgttccaatcttggctccgttgtgctacagctgaagaaactgggaattgatgatctcgtg
cattttgatttcatggacccgccagctcctgagaccctaatgagagccctagagttgctg
aactacctagcggcccttgacgacaatggtgacctcaccgagctgggctccatgatggct
gagttccctctggacccccagcttgccaagatggtcattgccagcacggacttcagttgc
tccaacgagatcttgtccataactgccatgctgtcagtcccgcagtgctttgtgcgcccg
acggaactgagaaaggttgctgacgagtgtaagatgaggtttgcgcacatagacggagac
catcttacgctgttgaacgtctaccacgccttcaagcaaaatcaagaagacccgcagtgg
tgctacgacaacttcatcaacttccgctcgcttaagagcgcagacaacgtgagacagcag
ctggcgcgcatcatggaccgcttcaacctgaagaggagcagcacggacttcaccagccga
gactactacatcaatatacgcaaggctcttgtgtgcggattcttcatgcagattgcccac
ctggagcgaactggccactacctgacagtgaaggacaaccagatagtgcagctgcaccct
tccacctgtctcgaccacaagcccgagtgggtgctctataacgagtttgtgctcaccaca
aagaactacatacgaactgtgacggacgtgaaaccagaatggttgatacagatagctcca
caatactacgagatgaccaatttcccactttgttgcaggttgatacagatagctccacag
tactacgagatgtccaatttcccactttgttgcaggttgatacagatagccccacaatac
tatgagatgtccaatttcccactttgttgcaggttgatacagatagctccacaatactat
gagatgtccaatttcccactttgcgaggccaagcgacagctggagaggattatagccaaa
ctccagtctaaaggatataccgaataa
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