Dreissena polymorpha (zebra mussel): 127877722
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Entry
127877722 CDS
T08834
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dpol
Dreissena polymorpha (zebra mussel)
Pathway
dpol03013
Nucleocytoplasmic transport
dpol03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dpol00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127877722
03015 mRNA surveillance pathway
127877722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpol03019
]
127877722
Enzymes [BR:
dpol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127877722
5.6.2.5 RNA 5'-3' helicase
127877722
Messenger RNA biogenesis [BR:
dpol03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127877722
mRNA cycle factors
Common to processing body (P body) and stress granule
127877722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
NPHP3_N
UvrD-helicase
Helicase_RecD
AAA_16
ATPase
nSTAND3
SRP54
AAA_22
TraI_hel_assoc_N
PhoH
Motif
Other DBs
NCBI-GeneID:
127877722
NCBI-ProteinID:
XP_052279837
LinkDB
All DBs
Position
4:97085250..97121082
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AA seq
1108 aa
AA seq
DB search
MSIDAYGPNSQTLTFLDTEEDLLGADTQGTDFDFNDFTLPSQTQSQTQASQLDPAQSQSQ
VNDLPVQNGLDGNINAITQGVGELQFEEDEEDQFYIKDLPKHACAYCGIHEPACVVYCNT
TKKWFCNGRGNTSGSHIINHLVRARAKEVTLHKDGPLGETVLECYNCACRNVFLLGFIPA
KADSVVVLLCRQPCATLSNLKDMNWDPSQWQPLIQDRQFLPWLVKVPADQDQLRARQISA
QQINKLEELWKDNPEASLEDLEKPGVDEEPQQVLLRYDDAYQYQSIFGPLVKLEADYDRK
LKESQTQDNIVVRWDLGLNKKRIAYFNLPKANDEMKLMHGDELRLRYMGELHKHWSGVGH
VIKIPDNHSDEIAIELKSNAGVPSECTHNFVVEFVWKSTSFDRMQASMKTFAVDELSVWG
YIYHKLLGHEVEDVVIKCTLPKRFSATNLPELNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATVVYHLAKQNNGQVLVCAPSNIAVDQLTEKIHKTGLKVVRLCAKSREAIESPVAFL
ALHNQIRNMDSFPELAKLQQLKDETGELSSTDEKRYRSLKKQCERELLQNADVICCTCVG
AGDPRLAKMQFRSVLIDESTQATEPECMIPVVLGCRQLILVGDHCQLGPVVMCKKAARAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTPAERIRNNLDIPW
PQPDKPMFFYTSSGQEEISSSGTSYLNRTETASVEKIATRFLRSGVKPEQIGIITPYEGQ
RAYIVQYMQYSGSLNKKLYMEIEVASVDAFQGREKDFIILSCVRSNEHQGIGFLNDPRRL
NVALTRAKYGIIIVGNPKVLSKQPLWNHLLTYYKEQKCLVEGPLNNLKESLIQFSKPRKL
VNSTNPGGRFMSNTMFDAREVLIPGGSYDRSVGYREPVVRTHDQLGFIGPERAYTGPAMN
MPVPVNMFISPMPQAFHPVQQPMQMPMNARGGRGGGMRGGRGGRTKPPRYSQNSQQQSQM
LHMSNSQGSQDVSQGFSQGPLTQGPLSMSQPFQMSQPGLSGLSQPELSQDSFMADDFKSQ
ADGMLSQDSTYQGDRMFYASQLSQGAFN
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgagtatagacgcctatggcccgaattctcagacactgaccttcctggataccgaagag
gatctacttggagccgacacccagggaacagatttcgacttcaatgactttacattgcca
tcgcaaactcagtcccaaactcaagcatctcaacttgatccggctcagagtcaaagtcag
gtcaatgatttgccagtgcagaatgggttggacggtaacattaatgccatcactcagggg
gttggagagctgcagtttgaggaagatgaagaagaccaattctatataaaggaccttcca
aaacatgcctgcgcatactgtggcattcatgagccagcctgtgtagtgtactgcaataca
accaagaagtggttctgcaatggcaggggcaacacatctggaagccatatcatcaatcac
ctggtgcgcgctcgtgctaaggaagtgacactgcacaaagatggaccgctaggagagaca
gtgctggagtgttacaactgtgcctgccgcaatgtcttcctgcttggctttatacctgcc
aaggcagactctgttgtcgtactgctgtgtaggcagccgtgtgctacacttagcaacctg
aaggacatgaactgggacccgtcccagtggcagcccctgatccaggaccgccagttcctg
ccctggctggtgaaggtgccggcagaccaggaccagctgagggcccgtcagatctccgcg
cagcagatcaacaagctggaggagctgtggaaggacaaccctgaggccagcctggaggat
ctggagaagcctggcgtggatgaggagccacaacaagtcctgttgaggtatgatgatgcg
taccagtaccagagcatcttcggtccccttgtcaagctggaggcagactatgatcgcaag
ctgaaggagtcccagacccaggacaacatcgtggtgcgctgggacctcggcctcaacaag
aagaggatcgcttactttaatctgcccaaggcaaacgatgagatgaagctgatgcatgga
gatgagttgaggctgcgctacatgggggaactccacaagcactggtcgggagtggggcat
gtcatcaagattcctgacaaccacagtgatgagattgccatagagctgaagagtaacgct
ggggttcccagtgagtgcacacacaactttgtggtggagtttgtctggaagtccacatct
tttgatagaatgcaggcgtccatgaagacgtttgcagtggatgagctctctgtgtggggc
tatatctaccacaagctgttgggtcacgaggtggaggatgtggtcatcaagtgcacgctg
cccaagaggttcagtgccaccaacctgcctgagctcaaccactcccaggtgtacgcagtg
aagacagtcctacagcgacctctcagtctcattcagggtccccctggtactggcaagact
gtcacatcggccactgtagtgtaccacctggccaagcagaacaacggtcaggtgctggtg
tgtgctccctccaacatagctgtggaccagctcactgagaagatacacaagactggactc
aaggttgtgcgtctgtgtgccaagagtcgtgaggcgatcgagtccccagtggccttcctg
gccctgcacaaccagatcagaaacatggacagtttcccagagctggccaagctgcagcag
ttgaaggatgagacgggagagctgtcctccacggacgagaagagatatcggtccctgaag
aagcagtgtgagagggagcttctgcagaatgccgatgtgatctgctgcacatgtgtgggg
gcaggtgacccgaggctggctaagatgcagttccgctccgtgctcatagatgaaagtacg
caggctaccgagcctgaatgcatgataccggtcgtgttgggttgcagacagttgatcctg
gtaggtgaccactgtcaactgggcccggtggtgatgtgcaagaaggcagcgcgtgcaggc
ctgtcccagtccttgtttgagagactggtggtgctgggtatacgccccatacggctccag
gtgcagtaccgcatgcaccctgcactcagcgccttcccttccaacatcttctatgagggg
tcactgcagaatggtgtcacgccagctgaaaggatccgcaataatctggacatcccctgg
ccccagccggacaagcctatgttcttctacacgtcgtctggacaggaagaaatctccagt
tctggaacatcctatctcaacaggactgagacggcctcggtggagaagatagccacgcgg
tttctgcggtccggggttaagccagagcagattggcatcatcaccccctatgagggccag
cgggcttacatcgtacagtacatgcagtatagcggctctctcaacaagaaactctacatg
gagatagaggtggccagtgtggatgcgttccagggccgagagaaggacttcatcatcctg
tcgtgtgtgcgctctaatgagcaccagggcattggcttcctcaatgacccccgccgcctc
aatgtggccctcacccgcgcaaaatatgggatcatcattgtgggcaatccaaaggtgttg
tcaaaacaacccctatggaaccaccttctgacgtactacaaggagcagaagtgtctggtg
gagggcccactgaacaacctgaaggagagcctcattcagttcagcaagccccgcaagctg
gtcaactccaccaaccctggcggacggttcatgagcaacaccatgtttgacgcgagggag
gtcctcatccccggaggcagttatgacagaagtgtggggtaccgtgagcctgtggttcgc
acccatgaccagctgggcttcatcggcccagagagggcgtatactggccctgctatgaac
atgcccgtgcctgtgaacatgttcatcagccccatgccccaggccttccacccggtacag
cagccgatgcagatgcctatgaatgcccggggtggtcgtggtggtggtatgcgcgggggc
cggggtggcaggaccaagcctccccgctacagccagaacagccagcagcagagccagatg
ttgcacatgtccaacagccaggggagccaggacgtgtcccaggggttctcccagggtccc
ctcacacaggggccgctgtccatgagtcagcccttccagatgtcccagccaggtctgtcc
ggcctctcacagccagaactgtcgcaggacagtttcatggcagacgacttcaagtcgcag
gctgacggcatgctgtcccaggactcgacgtaccagggagaccgcatgttctacgcttca
cagctctcacagggtgcattcaactag
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integrated database retrieval system
