Dictyostelium purpureum (cellular slime mold): DICPUDRAFT_152207
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Entry
DICPUDRAFT_152207 CDS
T02090
Name
(RefSeq) hypothetical protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
dpp
Dictyostelium purpureum (cellular slime mold)
Pathway
dpp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DICPUDRAFT_152207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpp03019
]
DICPUDRAFT_152207
Enzymes [BR:
dpp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DICPUDRAFT_152207
Messenger RNA biogenesis [BR:
dpp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
DICPUDRAFT_152207
mRNA degradation factors
3'-5' decay
Ski complex
DICPUDRAFT_152207
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
10501415
NCBI-ProteinID:
XP_003288018
JGI:
Dicpu1_152207
UniProt:
F0ZKR3
LinkDB
All DBs
Position
Unknown
AA seq
1286 aa
AA seq
DB search
MTEELKDIDSFLNELNILETNNSNEKPNKNLNKQQNTNESVDLPNWWVNPITLTSQPEIT
PIQPKNNFNVDKILENLNLKYLNFDNNDQYNNNNNNNGNSIDSNNNDYLVWPRQINTDNW
NYKLLIERELSIPCSTVELVIDKIHYQISITNYREVFINTDINSSNSTSLDRPWSQSPAG
TSKDYFHRGNTSNLPFLPGGVKPSMQSNLTTIGELRDKFDWVQFWHSKSLLTTPPGLDNG
ILDFTKSLQEQQEEAGNEDDDTVSFNYTLKDLEKEIEQQLKLEENEENQSIESQDSDLNE
EDEVDESIANQDQVGEINEKQDIDNLIDVEKDNTKQQPEEEEKEDSKGSAERQWGFEDKK
EILSPLSDLIANPAIEYPFELDSFQKQAILHMEQGDSVFITAHTSAGKTVIAEYAIAMAA
KNMTRAIYTSPIKALSNQKFRDFKNTFNDVGLITGDVSISPASSCLVLTTEILRSMLYKG
ADLIRDIEWVIFDEVHYLNDLERGVVWEEVIIMLPPYVKMVFLSATVSNPLEFANWIGRT
KQIPIYVIGTTKRPIPLEHYIHTPSNEMFKIVDSTRKFLPGGYNDAFNSLYKNNSNKPNQ
RGGGGGARQGGSNNNSSGWSKLITTLKDKQQLPVIIFSFSKNKCQEYASSLGSTINLTQS
NEKSQIRQFIEQSLGRLCEDDKTLPQILQMRELLERGIGVHHGGLLPIVKELVEILFSKS
LVKVLFATETFAMGVNMPAKTVVYSNTRKHDGITFRDLLPGEYTQMSGRAGRRGLDKVGT
VIITYWKDIPEQATIESMLLGTPSRLNSQFRLTYNMILNLLRVPDFKVEDMIKRSFSEFS
SQQEIPDIEKQISKLTEQYKSLGEIECILGEPDIENYYSLFSQSKNINERIQKTILNLPN
SNHFSPGRVLVLSNDDEMKYNSYTIGVIIQCNTEIIKQYTNNQVNRTFKIFSLKSSSNNA
FEGHQITISNGSDIKKVCDEKIKVDIKLIESADPIATNSLEQQLQRIIEEYPLPLGPKAI
DPIHQLKLKDVNFVTTYEHLEKIEKLIPQSKCHKCPRLAEHYELTEKKHQLQEAIRDYKY
TASDENLKLMPQFNIRLDILKELGYIDQDNSVTLKGRVSREINTCEELVPTELIFENAFI
SLEPSEVVSVLSCLIFQEKDALEPILTPRLDEARKKLIEIATKTYQVESKNGLDVSPEEK
LETTLKFGLMQVVYEWARGTPFNDICKLTNVLEGSIVRAITRIGETCQEVRNAARVIGDT
KLLQKMEEAIKLIKRDIVYTSSLYVN
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atgacagaagaattaaaagatatagattcatttttgaatgaattaaatattttagaaaca
aataatagtaatgaaaaaccaaataaaaatttaaataaacaacaaaatacaaacgaatca
gtcgatttaccaaattggtgggtaaatccaataacattaacatcacaacccgaaatcaca
cccatacaaccaaaaaataatttcaatgttgataaaattttagaaaatttaaatttaaaa
tacttaaattttgataataatgatcaatataataataataataataataatggtaatagt
attgatagtaataataatgattatttagtttggccaagacaaattaatacagataattgg
aattataaattattaattgaaagagaattatcaataccatgttcaactgtagagttagtt
attgataaaattcattatcaaatttcaattacaaattacagagaggtattcataaataca
gatattaattcaagtaactcaacatcattagacagaccatggagtcaaagtccagccggt
acatcaaaagattattttcatcgtggtaacacatcaaatttaccatttcttccaggtggt
gttaaaccttcaatgcaatcaaatttaacaacaattggtgaattacgtgataaatttgat
tgggtacaattttggcactcgaaatcactcttgacaactcctccaggtttagacaatggt
attttagactttacaaaatctttacaagagcaacaagaagaagcaggtaatgaagatgac
gacactgtaagctttaattatacattaaaagatttggaaaaagaaattgaacaacaatta
aaattagaagaaaatgaagaaaaccaatcaattgaaagtcaagatagtgatctaaatgaa
gaggatgaggttgatgagtctattgccaatcaagaccaagtcggtgaaatcaatgaaaaa
caagatattgataatttaatcgatgtagaaaaagataataccaagcaacaaccagaagaa
gaagaaaaagaagattctaaagggtctgccgaaagacaatggggtttcgaggacaagaaa
gaaattttatcaccattatcagatttaattgcaaacccagctattgaatacccattcgaa
ttagactctttccaaaagcaagctattttacatatggagcaaggcgactctgtatttatt
actgcacatacctctgctggtaaaaccgttatcgctgaatatgctattgccatggccgct
aaaaatatgacaagagcaatctatacctcacccatcaaagcattatcgaatcaaaagttt
agagatttcaaaaatacatttaatgatgttggtttaattactggtgatgtttcaattagt
cctgctagtagctgtttggtattaactacagaaattcttagatctatgctctataaaggt
gccgatttaatccgtgatatagagtgggtaatctttgatgaagtccattatcttaatgat
ttagaaagaggtgtagtttgggaagaagtcattattatgttgccaccttatgtcaaaatg
gtattcctttctgccacagtttcaaatccattagagtttgcaaattggattggtagaacc
aaacaaatcccaatctatgtcattggtaccaccaaacgtccaattccattagagcactac
atccacacaccctccaatgaaatgttcaaaattgttgatagcactagaaaattcctccca
ggtggttataatgatgcttttaattcactatacaaaaacaattcaaataaaccaaatcaa
cgtggaggcggtggtggtgcaagacaaggtggttcaaataacaatagttccggttggtca
aaattaattacaactctaaaagataaacagcaattaccagttattattttctcattcagt
aaaaacaaatgtcaagaatatgcaagctctttaggtagtaccattaatttgacacaaagt
aatgaaaaaagtcaaattcgtcaatttatagaacaatctttaggtagactttgcgaagat
gataaaactttaccacaaattttacaaatgagagaattattagagcgtggtattggtgtc
catcatggtggcttattaccaatcgttaaggaattggtcgaaattttattctcaaaaagt
ttagttaaagtactctttgctactgaaacctttgccatgggtgtaaacatgcctgccaaa
accgtagtttatagtaatactagaaaacatgatggaattacatttagagatcttttacct
ggtgaatatactcaaatgtctggtagagctggtcgtagaggtttagataaagttggtaca
gttattataacttattggaaagatattccagaacaagcaaccattgaatcaatgttactt
ggtacaccatcaagattaaacagtcaatttagattaacctataatatgattttaaattta
ttacgtgtaccagattttaaagttgaagatatgattaaacgttcattttcagaatttagc
agtcaacaagaaattccagatattgaaaaacaaatttcaaaacttacagaacaatataaa
tcattaggcgaaattgaatgtattttaggcgagccagatattgaaaattactattcactc
ttttcacaatctaaaaatattaatgaaagaattcaaaagacaatcttaaatttaccaaac
tcaaatcatttctcacctggtagagtgttagtattatcaaatgatgacgaaatgaaatac
aacagttataccatcggtgtcatcattcaatgtaacacagaaattattaagcaatatacc
aacaaccaagtcaacagaacatttaaaatcttttcattaaaatcatcctcaaacaatgca
tttgaaggtcatcaaatcacaatttcaaatggttcagatattaaaaaagtttgtgatgaa
aagattaaggttgatataaagctaatcgaatctgccgacccaatcgcaaccaactcatta
gaacaacaattgcaacgtattatcgaagagtatccattaccattaggtccaaaagccatt
gatccaattcaccaattaaagcttaaagatgtaaatttcgtcaccacctatgaacattta
gaaaaaattgaaaaacttataccacaatcaaaatgccataaatgtcctagattagcagaa
cactacgaacttactgaaaagaaacatcaattacaagaagccatcagagattacaagtat
actgctagtgatgaaaatttaaaacttatgccacaattcaacattagattagatatcctc
aaagagttgggttatatcgatcaagataattcagttacacttaagggtagagttagtcgt
gaaattaatacttgcgaagagttggttccaacagaattaatctttgaaaatgcttttatc
tctttagaaccaagtgaagtagtatccgtactctcatgtttaatcttccaagaaaaggac
gcccttgaaccaattcttacaccacgtttagatgaagctagaaaaaaactcattgaaatt
gccaccaaaacctatcaagtcgaatcaaagaatggtctagatgtatctccagaagaaaaa
ttagaaaccacacttaaatttggtttaatgcaagtagtttatgaatgggctagaggcact
ccattcaatgatatttgtaaattaaccaatgttttagaaggttcaatcgtcagagccata
acaagaattggggaaacctgtcaagaagtaagaaatgccgctcgtgttattggtgataca
aaactattacaaaaaatggaagaagccattaaattaattaaaagagatattgtatacaca
tcatcattatatgttaattaa
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