Dictyostelium purpureum (cellular slime mold): DICPUDRAFT_153473
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Entry
DICPUDRAFT_153473 CDS
T02090
Name
(RefSeq) hypothetical protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
dpp
Dictyostelium purpureum (cellular slime mold)
Pathway
dpp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DICPUDRAFT_153473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpp03019
]
DICPUDRAFT_153473
Messenger RNA biogenesis [BR:
dpp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
DICPUDRAFT_153473
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
New_glue
Motif
Other DBs
NCBI-GeneID:
10500068
NCBI-ProteinID:
XP_003289147
JGI:
Dicpu1_153473
UniProt:
F0ZP04
LinkDB
All DBs
Position
Unknown
AA seq
1045 aa
AA seq
DB search
MFNNNNSQQENNNSSNEDKVDQFSKQLFGNLVAAAKISNNLPSEEDYSYYQTFPEFKNRM
DHLGKRLLNLTQNFVQSENPKSDLLLTDTNDVDELSERFGGIVDVVDGMIDKVDKTIDPK
YNQNQTNVFISSTVVQNQQNTKKSTSNEVNMFYGSNIARPQLKFEDPVDNSNFPFLPKIK
TKPNSLVDLDPIFLKSQPKEILYGKIIRDKEQETLIFPHPYEYEINNFKYTEKQNQSCKE
ILSRGLEETPYTWIDSVRQLEELCDKLSHVEEFAMDLEHHNYRSYQGFVCLMQISTRGED
FIIDTLALRSHIHMLNNVTTNPAIVKVLHGSDSDIKWLQRDFGIYIVNMFDTGQASRVLE
YPSASLAFLLKYFCAVDANKKYQLADWRIRKIPEEMIKYAREDTHYLLYIYDRLRNELIN
KGKGSNNLLLEVLRRSRELALLKYEKEILDDNTHIQFAKKLNLQYNPVQLNVLKVIYHWR
EGLAREEDESVRYVLPNQMMFSIIENQPVTVQELIALCSPVPPSLKSHAHQLIQDILKAR
IEDSSKQQQFMPALHNVLQSQSNIYYNQKQQQIQQQQNSTTTNITTTTANDTTTKTSNPT
TTTTYSTTTNSTTLTTQNKPSPQQQQQQQQIQQQQIQQQQHQHQQQQYHQNQNQHQHQHQ
QQKDGRLSPIPNIKNNNSNSPVLTTEQLYKAAKWLSGEKLQAFQLVLNRRAAKLSSVNQS
NHSNTPISKGSLFDNGSCDEENPDRKRSKKIASMVATSFEPSSFAPVFKPSSQLKVIDQE
HQQNHSSSEKEDEMLDQDDDDDEDDEDDDEEDGTSETMDDGDKSSKSCDEDITSDKESDN
DDDEDDINSQVPKSMQEIYQLSNLNRRRNKEKKKLKENSTTTSTTSLIETTTGTKSKKDE
SVTDTFSFLKEIGWVNSDQSADSFKPVSQQPQQSSSPVQSSNSITNQPSQPQQQQQQQQQ
QQQQQAKKQQKQSTSSPQLPNQQQQQQFVSFDYSQVSNINQSNPNQQQNFFNTDYQTTKK
KSNQTTGAVKAKSGTFYPSSNYKKK
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atgtttaataataataatagtcaacaagaaaataataatagtagtaatgaagataaagtt
gaccaattttcaaaacagttatttggaaatctagtagcagcagcaaaaatatcaaataat
ttaccatcagaagaagattattcatattatcaaacatttccagagtttaagaatagaatg
gatcatttaggtaaaagattattaaatttaacacaaaattttgtgcaatcagaaaaccca
aaaagtgatctattattgacagataccaatgatgtagatgaactatcagaaagatttggc
ggcattgtagatgtagtagatggaatgatcgataaagttgataaaacaattgaccctaaa
tataatcaaaatcaaaccaatgtatttatatcctcaactgtagtacaaaaccagcaaaat
accaaaaaatcgacatccaacgaagttaatatgttttatggaagtaatatagcaagacca
caattaaaattcgaagacccagtcgataatagtaatttcccatttttaccaaagattaaa
actaaaccaaattcattagtcgatttagacccaatttttttaaaatcacaaccaaaagaa
attttatatggcaaaattattagagataaagaacaagaaacattaatattcccacatcca
tatgaatatgaaattaataattttaaatatacagaaaaacaaaatcaatcatgtaaagaa
attttatcgagaggattagaggaaacaccatatacatggatcgactctgttagacaattg
gaggaactttgtgataaattatcacatgtcgaggagtttgcaatggatcttgaacatcat
aattatagaagttaccaaggttttgtatgtcttatgcaaatttcaacaagaggtgaagat
tttattattgatactttagcattacgttcacatattcacatgttaaacaatgtaacaacc
aacccagcaatcgtcaaagtattacatggtagtgatagtgatatcaaatggctccaacgc
gattttggaatctacattgtaaatatgtttgataccggccaggcctcccgtgttttagag
tatccatccgcttcattggctttcctcttaaagtatttctgtgctgtcgacgctaacaag
aaatatcaattggccgattggagaataagaaagatcccagaagaaatgattaagtatgcc
cgtgaagatacccattacttgttatatatttatgatcgtttacgtaacgagctcattaac
aaaggcaaaggttccaataatctcttgttggaggttttacgtcgttctcgtgagctggcc
ctactcaagtatgaaaaagaaattttggatgataatactcatattcaatttgcaaagaaa
ttaaatcttcaatacaaccctgttcaattgaatgtcttgaaggttatctatcattggaga
gaaggcttggcccgtgaagaagatgaaagtgttcgttatgttcttccaaatcaaatgatg
ttttctattattgaaaaccaacctgtaacagtacaagaattaattgctttatgttctcca
gtaccaccatctcttaaatcacatgctcaccaacttatccaagatatattaaaggcaaga
atcgaggattcatcaaagcaacaacaatttatgcctgctcttcataatgttttacaatca
caatccaacatttattataaccaaaaacaacaacaaattcaacaacagcaaaattcaaca
acaacaaatattacaacaacaacagcgaatgatacaacaacaaaaacttcaaatccaaca
acaacaactacatattcaacaacaacaaattcaacaacattaacaacacaaaataaacct
tctcctcaacagcagcaacaacaacaacaaattcaacaacaacaaattcaacaacagcaa
catcaacatcaacaacaacaataccatcaaaatcaaaatcaacatcaacatcaacaccaa
caacaaaaagatggaagattatctccaattccaaatattaaaaataacaattcaaatagt
ccagtattaacaactgaacaactttataaagctgccaagtggttatcaggtgaaaaatta
caagcttttcaattggtgttaaatagaagagcagccaaattatcatcggttaatcaaagt
aatcattcaaatacaccaatttcaaagggtagcctatttgataatggtagttgtgatgaa
gaaaacccagataggaaaagatcaaagaaaattgcatctatggttgcaacttcattcgag
ccatcttcgtttgccccagtattcaaaccatcaagccaattaaaggtaatcgatcaagaa
caccaacaaaaccattcaagctctgaaaaagaagatgaaatgttggatcaagatgatgac
gatgatgaagatgacgaagatgatgatgaagaagatggaactagtgaaaccatggatgat
ggtgataaatcatcaaaatcttgtgatgaagatattacctcagataaagaaagcgataac
gatgatgatgaagatgatatcaatagccaggttccaaaaagcatgcaagaaatttatcaa
ctttcaaatttaaatagaagaagaaacaaagaaaaaaagaaactaaaagaaaattctaca
actacttcaactacctctttaatagaaactacaaccggaactaaatctaaaaaggatgag
tctgtaactgatactttttcattcttaaaagaaattggttgggttaatagtgatcaatct
gccgattcatttaaaccggtctcacagcaaccacaacaatcatcttcaccagttcaatct
tcaaacagtattacaaaccaaccatcacaaccacaacaacaacagcaacagcaacaacaa
caacaacaacaacaagctaaaaaacaacaaaaacagtctacttcatcaccccagctacca
aatcaacaacaacaacaacagtttgtttcctttgattattcacaagtttcaaatataaac
caatcaaacccaaatcaacaacaaaactttttcaatacagattaccaaaccaccaaaaag
aaatcaaatcaaacaaccggtgcagttaaggccaaatccggaacattctatccatcttca
aattacaaaaagaaataa
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