Dictyostelium purpureum (cellular slime mold): DICPUDRAFT_52125
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Entry
DICPUDRAFT_52125 CDS
T02090
Name
(RefSeq) CPSF domain-containing protein
KO
K12830
splicing factor 3B subunit 3
Organism
dpp
Dictyostelium purpureum (cellular slime mold)
Pathway
dpp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dpp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DICPUDRAFT_52125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpp03021
]
DICPUDRAFT_52125
03041 Spliceosome [BR:
dpp03041
]
DICPUDRAFT_52125
03036 Chromosome and associated proteins [BR:
dpp03036
]
DICPUDRAFT_52125
Transcription machinery [BR:
dpp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
DICPUDRAFT_52125
Spliceosome [BR:
dpp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
DICPUDRAFT_52125
Complex B
DICPUDRAFT_52125
Complex C
U2 SnRNP specific factors
DICPUDRAFT_52125
Chromosome and associated proteins [BR:
dpp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
DICPUDRAFT_52125
TFTC complex
DICPUDRAFT_52125
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_EML_2
WDR55
CNH
Motif
Other DBs
NCBI-GeneID:
10509114
NCBI-ProteinID:
XP_003283209
JGI:
Dicpu1_52125
UniProt:
F0Z743
LinkDB
All DBs
Position
Unknown
AA seq
1233 aa
AA seq
DB search
MYLYNLTLQRPTAVYQSICGNFSGTKQIEIVLNHGRSLEMIRYDEDGKMSSVLYSEVFGV
IRSIIPFRLTSGSKDYIVVGSDSGRVVILEYNSTKNQFDKVHQETFGRSGCRRIVPGQYL
AVDPKGRAFMIGAIEKQKLVYILNRDSSAKLTISSPLEAHKSSTIIFSMCGVDVGFENPI
FATISVDYSDDSGGNIEEDLEDNGKKKVLTFYELDLGLNNVVRKWSDQIDDTANIVMTVP
GSNEGPGGVLVTSEDYIVYRNQDHPEIRAKIPRRYNSNPDKGLLIVSYSSHKQKNMFFFL
VQSEFGDLYKITLDFKGEMVTAVNISYFDTIPLANSLTVLKNGFLFAASEFGDHSLYFFK
SLGDDTEEGNNEGTITMEEKDGFIWFKQREELKNLVQTSTLSSLSPIVDFKVLDIVREEN
PQLYSLCGTSKDSSLKVLRHGLSVSTITNAKLPGVPSGIWTVPKSNSPSAQDQTDKYIVV
SFVGSTSVLSVGETIQENHESGILESTTTLLIGSMGEDSILQVFPTGFRFIRSDMRTNEW
RAPGRKTIVRATCNQNQLVIALSGGEVIYFELDQSGGLTEIIKKDFRRDIACIEISPIPK
GRSMARFLAISDWEGPVRLLSLDRDNCLGQISMLDTDKVYIESLSIVEMQVNEAGVDNFK
VSSQNMGGSLFLFVGLKNGVIKRATLDNYSGELSDIRTRLLGRRPVKLFKIKVRGGNGIL
ALSSRVWLNYANQGKLEIVPLSVEPLENASNLSSDQSPESIVATSEDHIIIFTIDKLGDL
FNQETIKLGATPRRFIVHPQTNYIITLETETNYNTEQIDIEKINAERQAEYEKKKQEIQE
NMDMDMDMDDNNDDANTDGQIKKPKFIYKPKAGRGQWRSIIKIIDPISHQVYESYQLDEN
EAGFSLCTLSFSDRGDGEIFLVVGCGNNVILNPKSCESASINLYKFTEEGKKLQLVYKTE
AEEPVYAMAPFQGRLCAGVGKNIRIYDMGKKKLLRKCETKNLPNTIVNIHSLGDRLVVGD
IQESIHFIKYKKLENMLYVFADDLAPRWITSSVMLDYDTVAGADKFGNIFILRLPSNVSD
EVEEDPTGSKLKFESGLLNGAPHKLEHIANIFAGDAITTLNKTSLVVGGSDVLLYTTISG
AIGALIPFVSREDVDFFSSLELQLRNEHAPLCGRDHLAYRSYYFPVKNIIDGDLCEQFIT
LDPQKQRQIAEELSRSPSEVLKKLEDIRSQKLL
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgtatttatataatttaacattgcaaagaccaacagcagtatatcaatcgatttgtggt
aatttttcaggtactaaacaaattgaaattgtattaaatcatggaagatcattagaaatg
attagatatgatgaggatggtaaaatgtcatcggtactctattcagaagtttttggtgtt
atacgttccattataccgtttcgtttaacaagtggttcaaaagattatattgttgttggc
tctgattctggacgtgttgttattttagaatataattcaactaaaaatcaatttgataaa
gttcaccaagaaacatttggtcgttcaggttgtcgtagaattgtaccaggtcaatattta
gcagttgatccaaaaggtagagcctttatgattggtgctattgaaaaacaaaaattagtt
tatattttaaatagagattcatcagccaaattaacaatttcgtctccattggaagcacat
aaatcaagtacaattatattttcaatgtgtggtgttgatgtaggctttgaaaatccaata
tttgcaactatttcagtagattattcagatgatagtggtggtaatattgaagaggattta
gaagataatggcaaaaagaaggttttaacattttatgaattggatctaggtttaaataat
gttgtaagaaagtggagtgatcaaattgatgacactgcaaatattgtaatgacagtacca
ggaagtaatgaaggtccaggtggtgttttagtcacatcagaagattatattgtctataga
aatcaagatcatccagaaattagagctaaaatcccaagacgttataatagtaatccagat
aaaggtcttttaattgtatcttattcatcacacaagcaaaaaaatatgtttttctttttg
gttcaaagtgaatttggtgacctctacaagatcacattagactttaaaggagagatggtt
accgctgttaatattagttatttcgatacaattccattagcaaatagtttaactgtatta
aagaatggtttcttgtttgctgcatcagaatttggtgatcattcattatatttctttaaa
tcattaggtgacgataccgaagaaggcaacaatgaaggtaccattacaatggaagaaaaa
gatggtttcatttggttcaaacaaagagaagagttaaagaatttggtacaaacatcaacc
ttatcatcattatcaccaattgtagatttcaaagttttagatattgttcgtgaagagaat
ccccaactttattcactttgtggtacaagtaaagattcatcattaaaagttttaagacac
ggtctatcagtttcaactattaccaatgcaaaattaccaggtgtaccaagtggtatttgg
actgtaccaaaatcaaactcaccatcagcacaagaccaaaccgataaatatattgtagta
tcattcgttggaagcacatcagtattaagtgtaggtgaaactattcaagagaatcatgaa
agtggtattttagaaagcacaacaactctattaattggttcaatgggtgaagattcaatt
ttacaagttttcccaacaggttttagatttattcgttccgatatgagaactaatgaatgg
agagccccaggtagaaagacaattgtacgtgccacttgcaaccaaaaccaattagttatc
gcattaagtggtggtgaagtaatttactttgaattggatcaatctggtggtttaacagaa
attattaaaaaggatttcagaagagatattgcttgtattgaaatctcaccaataccaaaa
ggaagaagtatggctcgtttcttggctatcagtgattgggaaggtcccgtaagattattg
tcattagatagagataactgtttgggtcaaatttcaatgttagataccgataaagtttac
attgaaagtctatccattgtagaaatgcaggtcaacgaagcaggtgtagataatttcaaa
gttagttcacaaaatatgggtggctcattatttttatttgtaggtttaaagaacggtgtt
attaaacgtgctactttggacaattattcaggtgaactttcagatattcgtactcgttta
ctcggtagaagacctgtcaagttattcaaaattaaagttagaggtggtaatggtatttta
gcactttccagtagagtttggttaaattatgcaaatcaaggtaaattagagatcgtacca
ctctctgttgaaccattagaaaatgcctcaaatttatcatcagatcaatcaccagaatca
attgtagccacaagcgaagatcatattattatctttacaatcgataaattgggtgatctt
ttcaatcaagaaaccatcaaattgggtgccacaccaagaagatttattgttcatccacaa
accaactatattattacattagagacagaaaccaactacaacacagagcaaatcgatatt
gaaaaaataaatgcagaaagacaagccgaatatgaaaagaaaaaacaagagattcaagaa
aatatggatatggatatggatatggacgataacaatgacgatgctaacacagatggtcaa
attaaaaaacctaaatttatatataaaccaaaagcaggtagaggtcaatggagatctatt
attaaaatcatcgatccaatatcacatcaagtttacgaatcatatcaattagacgaaaac
gaagcaggtttcagtttatgtacattaagttttagtgatagaggcgacggtgaaatcttt
ttagttgttggttgtggtaacaatgttattttaaatccaaagagttgcgaatctgcttct
atcaatctttataaatttacagaagaaggaaagaaattacaattagtttacaaaactgaa
gccgaagaaccagtttatgctatggctccattccaaggtcgtttatgtgctggtgttggt
aaaaatattcgtatctacgatatgggtaaaaagaaattattaagaaaatgcgaaactaaa
aaccttccaaacactatagtcaacattcattcattgggtgatcgtttagtagtcggtgac
attcaagagtcaattcactttatcaaatataaaaaacttgaaaatatgttatatgttttt
gcagatgatttagctccacgttggataacctccagtgtaatgcttgactatgatactgtc
gcaggtgccgataaatttggtaatatctttatacttcgtcttccatcaaatgtatccgat
gaagttgaagaagatccaactggctcaaaattaaaattcgaatctggtcttctcaatgga
gctccacataaactcgaacatattgcaaatattttcgctggtgatgcaattactactctc
aataaaacttcattggttgttggtggtagtgatgtattattatatacaactattagtggt
gctattggtgctctcattccatttgtatcaagagaagatgttgactttttctcatcccta
gaacttcaactcagaaatgaacatgctccactttgcggtcgtgaccacttggcctatcgt
tcctattatttccctgttaaaaatattatagatggtgacctatgtgaacaattcattact
ctagaccctcaaaaacaaagacaaatcgccgaagaactttcaagatcaccttctgaagtt
ttaaagaaattagaagatattagatctcaaaaattattataa
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