Desulfobulbus propionicus: Despr_0486
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Entry
Despr_0486 CDS
T01413
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dpr
Desulfobulbus propionicus
Pathway
dpr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dpr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Despr_0486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpr03019
]
Despr_0486
03009 Ribosome biogenesis [BR:
dpr03009
]
Despr_0486
Enzymes [BR:
dpr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Despr_0486
Messenger RNA biogenesis [BR:
dpr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Despr_0486
Ribosome biogenesis [BR:
dpr03009
]
Prokaryotic type
rRNA processing factors
Despr_0486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Sec23_trunk
DUF4455
Motif
Other DBs
NCBI-ProteinID:
ADW16666
UniProt:
A0A7U4DN27
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All DBs
Position
complement(500287..502539)
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AA seq
750 aa
AA seq
DB search
MTANDPNEKDEKERREKAPPARKAKTGAWWKSVPRAASKESVKMVAPSDAASLEPAEAQP
DQMVLPLPSSRSDAEGQIASTLPPALESPSETPPAGDALAAAPSSVVAPSEEAEPVVIEP
DSPPAPVVSAASVTEPAESASTETVENVSQPVAAAADSAASEEQGPALEPSDDGEPGEEA
ALPKKRRPRRGGRKRGKQAEAAPGEDAPSAEETDSAIAPMIEPDRDEDEETDRVEDEESE
IPQKAATYKLLINAEEPEECRIALVEDGRLESFHVTTIDREPTKNNIYKGRIVSIEANLQ
AAFVDIGTGRNGFLPFNEIHPEYYRQDVNERCRNLIAQHQWKKLKIEEVMQKGQEVLVQV
VKEVTGNKGANMTTYLSLPGRCLVLMPGSDSAGISRKIVGEERRTNLREIMSEFEIPEGI
GYIIRTASAETTKAILEKDLNTLLELWEEIKKRGQTMDAPALVYEEQDTVVRFLRDHFFP
EIKEILVDTEESLDNVNAFIEQLPAKQRQVKVRLHRSAKPIFNQYNIEEQIESIFKPQVP
LPSGGSIVINPTEALVAIDVNSGRTSKNSDFDETIFLANMEAAAELARQLRLRDLGGLIV
VDFIDMRNKKHIREVERQVKMSMKRDKAKVDISKISRFGLMQISRQKMGAPIEKGSYRTC
EYCQGRGTVRSVETLALYYLRRIQTGITRKKVGRVECRFPLDVAQYLLNKKRAELAELEA
KHRARIDIIPRVEMKPSEHQIDYLEAEGGR
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaaacgatcccaacgaaaaagacgaaaaagaaagaagagaaaaagccccacca
gcgcgcaaggcgaaaaccggcgcctggtggaaaagcgtgccccgcgccgcatccaaggaa
agcgtcaagatggttgctccgtcagacgctgcttccctggagcctgccgaagcgcagcct
gaccagatggtccttcctctcccatcgtcacgatccgacgccgaggggcagatcgcatcc
accctgccccctgcccttgaatcaccctcggaaactcctccggccggcgacgccctcgcg
gccgcgccctcttcggttgtcgcgccatcggaggaggccgagccggtcgtgatcgaaccc
gattccccgcctgccccggtcgtctcggcagcatcggtgaccgaaccggccgaatcggcc
tccacggagacggtcgagaacgtctcccaaccggttgccgccgctgcggacagcgcggcc
tccgaagaacagggtccggccttggaaccgtcggacgacggcgaacccggcgaggaagcg
gccctgcccaaaaaaaggcggccacgtcgaggcgggaggaagcgcggcaaacaggcggaa
gcagcccctggcgaggacgcaccaagtgccgaggaaacggacagtgccatcgcccccatg
atcgaaccggaccgcgatgaggacgaggagacagaccgggtcgaggacgaagaatctgaa
attccgcaaaaggctgccacctacaaactactgatcaatgccgaggaaccggaagagtgt
cgcatcgccctggtggaagacggccggctggaatccttccatgtcaccaccatcgatcgc
gaaccgaccaagaacaacatctacaaaggccggattgtgtccatcgaggccaacctgcag
gccgcctttgtcgacatcggcaccggccgcaacggctttttgcccttcaacgaaatccac
cccgaatactaccgccaggatgtcaacgaacgctgccgcaacctgatcgcccagcaccag
tggaaaaagctgaagatcgaggaagtgatgcagaaaggccaggaagtgctggtccaagtt
gtgaaggaggtgaccggcaacaagggcgccaacatgaccacctacctttccctgcccggc
cgctgcctggtgctcatgcctggcagcgacagcgccggcatctcgcgcaagatcgtcggc
gaggaacggcggaccaacctgcgtgagatcatgagtgagttcgagattcccgagggcatc
ggctacatcatccgcacggccagcgccgagaccaccaaggccatactcgaaaaggatctc
aacaccctgctcgaactgtgggaagaaatcaagaaacgtggccagaccatggatgcaccg
gccttagtctacgaggaacaggacacggttgtccgcttcctccgcgatcatttctttccc
gagatcaaggaaattctggtcgacaccgaggagtcgctcgataatgtcaacgctttcatc
gagcagctgccggccaagcagcgccaggttaaggtgcggctgcatcgcagcgccaagccc
atcttcaaccagtacaatatcgaggagcagatcgagtcgatcttcaagccgcaggtgccc
ctgccctcgggtggctcaatcgtgatcaatcccaccgaggccctggtggccatcgacgtc
aactccggtcgaacctcgaaaaactcggattttgacgagacaatcttcctcgccaacatg
gaggcggccgcggagctggctcgacagctcagactgcgcgacctgggcggcctaatcgtg
gtcgacttcatcgacatgcgcaataaaaagcatatccgcgaggtcgagcgccaggtgaag
atgagcatgaagcgcgacaaagccaaggtcgacatcagcaaaatctcgcgctttggcctg
atgcaaatttctcggcagaaaatgggcgcgcccatcgagaagggcagctaccggacctgc
gagtattgccagggccgaggcacggtacgctcggtggaaaccctggccctctactatctc
cgccgcatccagactggcatcacccgcaagaaggtgggccgggtcgaatgccgttttccc
cttgatgtggcccagtacctgctcaacaaaaaacgagcggaactggccgagctggaggcc
aagcaccgggcacggatcgatatcatccccagggtggagatgaaaccatcggaacatcag
atcgactacctcgaagccgagggtgggcgctga
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