Desulfobulbus propionicus: Despr_2496
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Entry
Despr_2496 CDS
T01413
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dpr
Desulfobulbus propionicus
Brite
KEGG Orthology (KO) [BR:
dpr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dpr03016
]
Despr_2496
Enzymes [BR:
dpr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Despr_2496
Transfer RNA biogenesis [BR:
dpr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Despr_2496
Prokaryotic type
tRNA splicing ligases
Despr_2496
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADW18634
UniProt:
A0A7U3YNI1
LinkDB
All DBs
Position
complement(2852417..2853589)
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AA seq
390 aa
AA seq
DB search
MQRVITTEKIPLMLWLAELDADALEQARHLANLPCAFHHVAIMADAHVGYGMPIGGVLAT
IGAVIPNAVGVDIGCGMRAVRTGLSDIDPPELKKILAGLRQAIPLGFKHHDKPRPVASLP
DPGDLEREMPVVAEEFASARCQIGTLGGGNHFIEIQRGRDQRIWLMVHSGSRNIGYKVAG
QYNTLAIRLAKTKGQEAIPSQWQLAALPLASAEGQRYLREMEYCVAFARANRREMMNAFQ
EIVAEITGCDQFEPPVDVAHNYAARETHFGREVWVHRKGATRAFAGEYGIIPGSQGSRSY
IVRGLGNPQSFMSCSHGAGRVLGRKEAQRVLNLREEIDKLNARHILHSLRHRSDLEEAPG
AYKDINVVIASQADLIEVVTELEPLAVLKG
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
gtgcaacgggtcatcacaaccgagaaaattcccttgatgctctggctggcggagctggac
gcggacgccctggagcaggcgcggcacctggccaatcttccctgcgccttccatcatgtg
gccatcatggccgatgcccatgtggggtacggcatgcccatcggcggggtactggcgacc
atcggcgccgtcattcccaacgcggtgggggttgacatcggctgcggcatgcgggccgtg
cgcaccgggttgagcgacatcgatccgccggagctgaagaaaatcctggccggcctgcgc
caggccatcccgcttggattcaagcatcacgacaaaccgcggccggtggcctccttgccc
gatccgggtgacctggagcgggagatgccggtggtggccgaggagtttgccagcgctcgc
tgccagatcggcaccttgggcggcggcaatcacttcatcgagatccaacggggccgtgat
cagcgcatttggctgatggtccattccggcagcaggaacatcggctacaaggtggccggc
cagtacaataccctggccatccgactggcaaaaaccaagggccaggaggccattcccagc
cagtggcagctggcggccctgccgctggcctcggccgaggggcaacgctacctgcgcgag
atggaatactgcgtggcctttgcccgtgccaaccggcgggagatgatgaacgccttccag
gaaatcgtggccgagatcaccggttgcgaccagtttgagccgcccgtggatgtggcccac
aactatgcggcccgcgagacgcatttcggccgggaggtctgggtgcaccgcaagggggct
acccgcgcctttgccggggagtacggcatcattcccggttcccagggcagccgcagctat
atcgttcgcggcctgggcaacccgcagtcgttcatgtcctgttcccatggcgccggccgg
gtgttgggccgcaaggaggcccagcgggtgctcaacctgcgcgaggaaatcgacaagctc
aatgcccgtcatatcctccactcgctccgccatcgcagcgatctcgaagaggcgcccgga
gcctacaaggacatcaacgtggtgatcgccagccaggctgatttgatcgaggtggtcacc
gaacttgagccgctggcggtgctcaagggctga
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