KEGG   Desulfotalea psychrophila: DP0406
Entry
DP0406            CDS       T00192                                 
Name
(GenBank) probable ATP-dependent DNA helicase
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
dps  Desulfotalea psychrophila
Pathway
dps03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dps00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DP0406
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dps03019]
    DP0406
   03400 DNA repair and recombination proteins [BR:dps03400]
    DP0406
Enzymes [BR:dps01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     DP0406
Messenger RNA biogenesis [BR:dps03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     DP0406
DNA repair and recombination proteins [BR:dps03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      DP0406
SSDB
Motif
Pfam: DEAD ResIII Helicase_C Pribosyltran RecQ_Zn_bind AAA_19
Other DBs
NCBI-ProteinID: CAG35135
UniProt: Q6AR89
LinkDB
Position
435764..437848
AA seq 694 aa
MRCKMKERAIGYLRNALNKPEANFRDGQWESIEQLLNNKRVLVVQRTGWGKSMVYFLATK
LLREQGAGPTLLISPLLSLMRNQVEAATRIGVRAKTINSTNNEEWDTVQTELEANQVDVL
LISPEKLGNDDFRQNILSTMADKVGLFVVDEAHCISDWGHDFRPKYRQIVRVLQALPSNI
PVLATTATANNRVVDDVKSQLGDDIELIRGSLVRQSLRLQNITMPSSAARLAWLAQTIPK
LPASGIVYTLTKRDADRVTEWLQLVNIDAKAYYNGVPNREDLEQQLFHNEVKVLVATVAL
GMGFDKPDLGFVIHFQRPSSVVHYYQQVGRAGRAVEEAYGILLSGTEDDQITDFFIRSAF
PPQKHISEVIRVLDESNDGLSSYSMEKVLNLRTKQIMNTIDYLAAESPAPVVKVGTKWNA
TATASTYRINQENIDAITAIRRQEQQQMHEYMQHTGCLMAFLQDALDDPAPQNCGKCQNC
APELRLDESYDNDLANKAGLFLRRSYQPVKAKKKWPPHNPLPTYNFSGMIRENLIASEGR
ALSLWRDAGWGELIYKGKYEDNHFSDVLVTACVEMLREWAPEEAPKWVTCIPSINHPDLV
PNFAKRLARALEIPFVDCVVKVQNNQQQKTMENSFQQARNLDGVFKVNLESRAYSPCLLI
DDMVDSGWTFTVAAALLRQVGCTAVYPLALALNS
NT seq 2085 nt   +upstreamnt  +downstreamnt
ttgaggtgcaaaatgaaagaaagagcaatagggtacctgcgaaatgcccttaataaacca
gaagcaaattttcgtgatgggcaatgggaaagtattgagcagttgctgaataacaaacgg
gttttagtcgttcagcgaacaggttggggaaaaagcatggtatactttcttgcaactaag
cttttgcgtgagcagggggctggtccgaccctattgatatcaccacttttatcgctaatg
cgtaaccaagttgaggcggctacacgaattggtgttagagcaaaaacaattaacagtacc
aataatgaggaatgggacaccgttcaaacagaactggaagccaatcaagttgatgtactg
cttatctcacctgagaagttaggtaatgatgattttcgacagaatatcttatcaactatg
gctgataaggtaggattgtttgttgtggatgaggcacattgtatttctgattgggggcat
gatttcagacccaagtacagacaaattgtacgggtgctccaagctttaccatcaaatatc
cctgttcttgcaacaacagcgactgctaataatagggttgtagatgacgttaaatcgcaa
ttgggtgatgacattgaactcataagaggttcacttgttcgtcaaagccttagacttcag
aatataacaatgccaagctctgctgcgagattggcttggcttgcccagaccattcctaaa
cttcctgctagcggcatcgtctacactttgacaaaaagggatgctgatagagtcactgag
tggcttcaactagttaatatagatgctaaagcttactacaatggtgttcctaacagagag
gatcttgaacaacagttatttcataatgaagtaaaagtactggtcgcaacagttgcactg
gggatgggctttgataagcctgatttagggtttgttatccattttcaaagacctagttct
gttgttcattattatcagcaagttggtcgtgcagggcgggctgttgaagaggcatatggc
attttattgagtggaacagaagacgatcagattacggacttctttatccgtagtgctttt
cctccacaaaaacatatatcggaagtaattagggtgcttgatgaatcaaatgacggtcta
tcttcttactctatggaaaaagttttgaatcttcggactaaacaaattatgaacaccata
gactatcttgctgctgagtcacccgcaccagttgtaaaagttgggacaaagtggaatgcg
actgccacagcttcaacgtatagaattaaccaagaaaacatagatgcaatcactgccatt
cgtcgccaagaacagcagcaaatgcatgagtacatgcaacatactggttgcttaatggca
tttctgcaagatgcactggatgatccagcacctcaaaattgtggaaaatgccaaaactgc
gcaccagagttacggctcgatgaaagctacgataatgacttggccaataaggcgggcctt
tttttgcgccggagttatcaacccgttaaagcaaaaaaaaaatggccaccccacaacccg
ttaccaacctacaatttttctggcatgatacgagagaatttaatagcatctgagggtcgt
gcgttaagtctctggcgtgatgccggatggggcgaattgatttataaagggaaatatgag
gataatcatttttctgatgtcttggtgacagcttgtgtggaaatgttgcgagaatgggca
cccgaggaggcacccaaatgggttacttgtataccatctatcaaccatcctgatttggta
ccaaatttcgcaaaacgtctggctagggcgttagagataccgttcgtagattgcgttgta
aaagtacaaaataatcaacaacaaaaaactatggaaaacagctttcaacaagcaagaaat
ttggatggtgtttttaaggttaatctcgaatctagagcatatagcccatgcttgcttatt
gatgacatggttgattctggttggactttcactgttgcggctgccctattacgacaagtt
ggttgcaccgcagtttatcctttagctctagcgctgaattcttaa

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