Desulfotalea psychrophila: DP0913
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Entry
DP0913 CDS
T00192
Name
(GenBank) probable formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
dps
Desulfotalea psychrophila
Pathway
dps03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DP0913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dps03400
]
DP0913
Enzymes [BR:
dps01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
DP0913
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
DP0913
DNA repair and recombination proteins [BR:
dps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DP0913
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_6
NFACT_N
IBR_1
Beta-prop_Vps41
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
CAG35642
UniProt:
Q6APT2
LinkDB
All DBs
Position
complement(1024977..1025810)
Genome browser
AA seq
277 aa
AA seq
DB search
MPELPEVEIILRGISPLICGRTIVAVGGSGKQLRLPLPLPELNRDASGKEITRLERRGKY
ISIFLNDGGILVLHLGMTGQLGVFPKEQARAKHDHFWCRLDNNQEFRYNDTRRFGSIRFL
PAGKSRMLQESLYQKLGPEPLGETFTADYLRRAAEGKSLAIKNFIMDSHIVVGIGNIYAN
ESLFKAAIHPARSVQSIEQEEWEKLARCIQQILLHAIDCGGSTISDFVNAKGGQGYFQMN
FKVYGKKSLPCPHCQGPISSEKIGGRASFFCPSCQRL
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgccagagctaccagaagtagagatcatattaagaggtataagtccccttatctgcgga
cgaacaatcgtggctgtcggcggtagtggcaagcaactacgactaccactacccctgcct
gagcttaacagagatgcctcggggaaagagatcacccggttggagcgtcgagggaaatat
atctccatattcctcaatgacggcggcatcctcgtcctccatctgggaatgacaggtcag
ctcggcgttttccctaaagaacaagcacgggcaaagcacgaccatttttggtgcaggctg
gacaataatcaggaatttcgctataatgacacccgtcgttttggttctatccgattttta
ccggccggcaagagcagaatgcttcaagagagtctctatcagaagttaggccctgaacca
ctgggcgagacattcactgccgactatctccgccgggctgcagagggcaaaagcctcgcc
attaaaaactttataatggatagtcatatcgtagtgggtatcggcaatatttacgccaac
gaaagcctcttcaaggcggctatccacccggcaagatccgtgcagagcatagaacaggag
gagtgggaaaagttggcacgatgcatccagcagatactgctacacgccattgactgcgga
ggatcaaccatcagtgatttcgttaatgccaaaggcggacagggatacttccaaatgaac
tttaaggtttacggaaaaaaaagtcttccctgccctcactgccaaggtcccatttcatcc
gaaaagataggcggtagagccagcttcttttgcccctcgtgccaacgattataa
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