Desulfotalea psychrophila: DP0936
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Entry
DP0936 CDS
T00192
Name
(GenBank) probable ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dps
Desulfotalea psychrophila
Pathway
dps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DP0936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dps03019
]
DP0936
Enzymes [BR:
dps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DP0936
Messenger RNA biogenesis [BR:
dps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DP0936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_22
Cas3-like_C_2
AAA_30
P-loop_SecA
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
CAG35665
UniProt:
Q6APQ9
LinkDB
All DBs
Position
complement(1048796..1050067)
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AA seq
423 aa
AA seq
DB search
MSFNTLGLSAPLLKAVAEKGYDTPSPIQAKAIPVIMEGKDVMAAAQTGTGKTAAFTLPIL
ELLSQSKRRVQANQARVLILTPTRELAAQIGESVTTYGKGLSLTSAVIFGGVNINPQMKR
LRGGVDILVATPGRLLDLHRQNAIKFNRLEILVLDEADRMLDMGFINDIRKVLAFLPKER
QNLMFSATFSSSINNLARGMFNNPVEISVTPPNSTVEIIDQCIYPVDKKQKPALLIQLIR
DNKWGQTLVFSKTKHGANRLVGQLQKKGINAAAIHGNKSQSARTKALAEFKNGTVQILVA
TDIAARGLDIDLLPHVVNFDLPHVQEDYIHRIGRTGRAGASGEAISLVCADEFALLADIE
RLIKKILPRKSVEGFEPVHPLPESCLNTRPFRAKSPKKNTEGRTRRQGSRPNSRGPKKPS
GDK
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgagttttaacaccctgggcctctccgccccgcttcttaaggccgtagccgaaaagggc
tacgacacaccatcgcccattcaagccaaggcgatccccgtgataatggaaggcaaagac
gtcatggctgcggcccaaactggtaccggcaagacggctgcattcaccctgcccatcctg
gaactactctcccaaagtaagcgccgagtccaggcaaatcaggcaagagtactcatctta
acgcccacccgtgaactggcagcccagattggtgagagcgtcaccacctacggcaagggt
ctatccctgacctccgccgtaatctttggtggggtgaatataaatccccagatgaagagg
ttgcgcgggggagttgatattctggtggcaacacccggtcgtctactcgatctccatcgc
caaaatgcgataaagtttaacaggttggaaatattagtcttagatgaggccgatcgaatg
ttagatatgggctttatcaacgatattagaaaagttttagccttcttacccaaggaacgt
cagaacctgatgttttctgcgaccttttcctctagcatcaataacctcgctcggggaatg
tttaacaatcccgtcgagatttcagtaacgccacccaatagcaccgtagaaataattgat
cagtgcatctacccggtggacaagaaacagaaaccagccctgctcatccaactcatccgc
gacaataaatggggccagactctggtcttcagcaagacaaaacatggagcaaaccgcctg
gtaggtcagttacagaaaaagggcatcaatgcggcggcaattcatggcaacaaaagccaa
agcgcacgcaccaaggccctggccgaatttaaaaacggtactgtgcaaattttagtggcg
acggatattgcggccaggggtctggacattgacctgctcccccatgtggtcaattttgac
cttccccatgtacaggaagattatatacaccgaattggacgtacaggccgagcaggtgcc
tcaggggaggcaatctctttggtctgcgccgatgagtttgcactacttgccgatattgaa
agactgatcaaaaaaatacttccacgcaagtccgtggagggttttgagccggttcatccc
ctgcctgaatcttgtctgaatacacgtccatttcgggctaaaagtcccaaaaagaacacc
gagggacggacgcgccgacaaggttccagacctaattcacgtggacccaagaagccaagt
ggcgacaaatag
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