Desulfotalea psychrophila: DP1118
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Entry
DP1118 CDS
T00192
Name
(GenBank) probable DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dps
Desulfotalea psychrophila
Pathway
dps03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dps00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DP1118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dps03021
]
DP1118
03400 DNA repair and recombination proteins [BR:
dps03400
]
DP1118
Enzymes [BR:
dps01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DP1118
Transcription machinery [BR:
dps03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DP1118
DNA repair and recombination proteins [BR:
dps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DP1118
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
CAG35847
UniProt:
Q6AP77
LinkDB
All DBs
Position
1263774..1267823
Genome browser
AA seq
1349 aa
AA seq
DB search
MEELFNFFQKPKGPVKFNKVKISLASPEQIIDWSHGEVKKPETINYRTFKPERDGLFCAK
VFGPVKDFECNCGKYKRMKHRGVVCEKCGVEVIQSKVRRERLGHISLAAPVAHIWFLKSL
PSKIGAVLDMTLKQLEKVLYFENYAVTQSEVEELPLGTLLTEEKYRQALSEYPAQFKVGI
GAEAIRELLAAQDLIGLSRVLREEMASTSSQTKRQKLGKRLFVIEAFRDSGNKPEWMILQ
VIPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLELDAPDIIIRNEKRMLQ
ESVDVLFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPH
LRLHQCGIPKKMALELFKPFIYNRLERKGLVTTIKSARKMVEKGAKEVWDVLEEVVTEYP
VILNRAPTLHRLGMQAFEAVLIEGKAIRLHPLVCMAFNADFDGDQMAVHVPLSVEAQVEA
RVLMMSTNNILSPANGEPVIIPSQDIVLGLYYMTRERINVKGEGRVFSSVDEAIISYDYK
ETDLQAKVKVRRPEGIVDTTMGRIILGELVPKSVPFVEVNKVMSKKALAALIDYTYRHAG
TKDTVILADRLKDTGYEYATRAGISICIDDMKIPATKVGLVKKGEDEVLDVEQQYSDGLI
TAGEKYNKVIDIWSKVSEDVANEMMDEIKTETFEDKDGNLVEGPSFNSIFVMADSGARGS
RDQIRQLAGMRGLMAKPSGAIIETPIKANFREGLDVLEYFISTHGARKGLADTALKTANS
GYLTRRLVDVAQEATIVEADCQTLDGIVAEPLLDGGEVLVPLGDRILGRVALEDVVDPFT
GEVLVVAGEQMEEDKVAILEEAGIDRVMIRSVLTCRSKRGVCAACYGRDLGRGHLINQGE
AVGVIAAQSIGEPGTQLTMRTFHIGGTASRSVEQAEIRTHRGGKVAFNNLHYVENSSGVK
IVMNRNAEIFVKDEFGRDREKFKVNYGAQVLVKEGEDIERDTVLADWDAYTIPIVAEVGG
IIRYGDIFNGITMQEKVDPVTGKSSMVIVHSAGGVTLNPRISVKNDRGKTLKLPDSEGFA
RYSLPVGSLISVEEGAEIKAGTIVGKIPRETSKTKDITGGLPRVAELFEVRKPKDPAIIA
RIDGKVSFGKELKGKRRVVVTPEYGEQQEYLVPKAKHIIVHEGDYVQAGEPLMEGTIVPN
DILSVLGVKALAKFLVDEIQEVYRLQGVKINDKHIEVIVRQMLKRVHITRANDSKFMIGE
NVEWWKFEEERDRLLAEGKKPGAAEPLLLGVTKASLSTESFISAASFQETTKVLTNAAMS
GRVDELLGLKENVIMGRLISAGTGINRVD
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
gtggaagagttatttaatttttttcaaaagccgaaaggaccagtaaaattcaataaggtt
aagatctctcttgcttcgccagagcagattatcgactggtcacatggcgaggttaaaaag
cctgagacgattaattatagaacattcaagccggaaagagatggtctcttctgtgcaaaa
gtttttggtcctgtaaaagactttgaatgtaattgtggaaaatataagcgcatgaagcac
agaggcgttgtctgtgaaaaatgcggtgttgaggttattcagtccaaggtacgacgtgag
cgactcggtcacatcagtcttgccgcacctgtagcccatatatggtttctcaagagtttg
cccagtaagattggtgccgttcttgatatgaccctgaagcaactggaaaaggttctctac
ttcgagaactatgcagttactcaatccgaggttgaagagttgcctctcggcacccttctt
accgaagaaaaatatcgtcaggccttaagcgaataccccgctcaatttaaagtgggtatc
ggtgcagaggctattcgtgaacttcttgcggcccaagatctcattggactctctcgagtt
ttacgagaagagatggctagcaccagttcacagaccaagcggcaaaaacttggtaagcga
ctctttgttatcgaggctttccgtgattcaggtaataagcctgagtggatgattcttcag
gtgatccccgtgttgccaccggatcttcgtcctcttgtgcctctggaaggtggacgtttt
gccacctctgatcttaatgatctttatcgtcgggtaattaaccgtaataaccgactgaag
agactcttagagctcgatgcgcctgatattattatccgcaacgagaagagaatgttgcag
gaatctgtggacgtactctttgataatggtcgtcgtggtcgagtgattaccggtgccaat
aagcgtcctctgaaatctctttcagatatgcttaagggtaagcagggacgttttcgtcaa
aatctcctcggtaagcgtgttgattattccggtcgttccgtaattgttgtaggaccgcat
ttgcgtctgcatcagtgtggtattccaaagaaaatggcacttgagcttttcaagccattt
atctataaccgtctcgagcgcaaaggtcttgttaccacgatcaagagtgcccgtaagatg
gttgaaaagggtgccaaggaagtatgggatgtgctcgaagaggtggtaacagagtatcct
gttatcctcaaccgcgcgccgaccctgcatagactcggtatgcaggcatttgaagcggta
ctgattgagggtaaggctattcgtcttcacccacttgtctgtatggcctttaatgctgat
tttgatggtgatcagatggcagttcacgtacctctctctgtggaagcacaggttgaagct
cgtgtactgatgatgtctaccaataatatcctctctcctgcaaacggcgagccggttatt
atcccatctcaggatatcgttctcggtctctactatatgacccgagagagaattaatgtg
aagggtgaaggacgggtattctcctccgtggatgaggcaattatctcctacgattataag
gagaccgacctgcaggctaaggttaaggttcgtcgtccagagggtattgttgacaccacc
atgggacgtattatccttggagagttggtgccaaagtctgtaccttttgtcgaggtgaat
aaggtaatgagcaagaaggccctggcggctcttattgattatacctaccgtcacgcaggt
accaaagatactgttatcttagccgatagacttaaagataccggttatgagtatgcaaca
cgtgccggtatctccatctgtattgatgatatgaagatccctgctactaaagtgggattg
gtcaagaaaggagaagacgaggtactggatgtagagcaacagtactccgatggtcttatc
accgctggtgagaagtacaataaggtcattgatatctggtctaaagtctcagaggatgtt
gctaatgagatgatggatgagattaagacggagacctttgaagacaaggatggtaatctt
gttgaggggccaagttttaactctatctttgttatggcagattctggagcaaggggttcg
cgtgatcagattcgtcagttggccggtatgcgtggtctgatggcaaaaccatcgggcgcg
attatcgagactcctattaaggcgaacttccgtgaaggacttgatgtacttgagtacttt
atctccactcacggtgctcgtaaaggtcttgccgataccgcacttaaaactgcaaactct
ggttatctcacccgtcgtctggttgatgttgctcaggaagctaccattgtcgaggctgat
tgtcagacccttgatggtattgttgcagagccccttctcgatggtggtgaagttcttgta
ccactgggagatcgtattctcggtcgtgttgcccttgaggacgttgttgatccgtttacc
ggtgaagttcttgtggttgcaggcgagcagatggaagaggataaggttgccattctcgaa
gaggcaggcattgacagggtcatgattcgttctgttttgacttgtcgttctaagcgcggt
gtatgtgcggcctgttacggccgtgatcttggccgtggtcaccttattaaccagggtgag
gctgtaggtgttattgccgcacaatcaattggtgagcccggcacacagcttaccatgcgt
accttccatattggtggtactgcgagtcgttctgttgaacaggcagagattcgtacccat
cgaggtggtaaggttgcctttaataatctccactatgttgagaattcaagtggtgtgaag
attgttatgaaccgtaatgccgagatctttgtcaaagatgagttcggtcgtgaccgtgag
aagtttaaggttaactacggtgctcaggttctggttaaggaaggcgaagatatagagcgc
gataccgttctggccgattgggatgcctatactattccaattgtggcagaggttggtggt
attattcgttacggcgatatctttaacggtattaccatgcaagagaaggtggatccagta
accggaaagtcctccatggttattgttcactctgcaggtggtgtgactctcaatccacgc
attagcgtgaagaatgatcgtggcaaaaccttgaaattgccggactctgagggctttgct
cgctacagtcttcctgtcgggtctcttatctctgttgaagagggagctgagattaaggcg
ggtactatcgtgggtaagattcctcgtgagacctcgaagactaaggatattacaggtggt
cttccacgtgttgctgagctttttgaggtgcgcaagcctaaggatcctgctatcattgct
agaattgatggcaaggttagctttggcaaggaactcaagggcaagagacgcgttgtggtg
acccctgagtacggtgagcagcaagagtaccttgtacctaaggcaaagcatattatcgtt
catgaaggcgattacgtgcaggctggtgagcctctcatggaaggtaccattgtaccaaat
gatatcttgagtgtgcttggtgttaaggcactggcaaaattcctggtggatgagatccaa
gaggtgtatcgtctccagggtgtaaaaattaatgacaaacatattgaagttattgtgcgt
cagatgctcaaacgggtacatatcactcgagccaatgattctaagtttatgattggtgag
aatgtagagtggtggaagtttgaggaagagagagatcgtcttcttgccgaaggaaagaaa
cctggtgctgccgagccgttattgcttggtgtcacaaaggcttcactttccacagaaagt
tttatttctgcggcatctttccaagagactaccaaggtattgaccaacgcagctatgtct
gggcgggttgatgagttgctaggattgaaagaaaatgttattatgggacgtttgatttct
gcgggtacaggtattaatagggtcgattaa
DBGET
integrated database retrieval system
