Desulfotalea psychrophila: DP1688
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Entry
DP1688 CDS
T00192
Name
(GenBank) related to ribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dps
Desulfotalea psychrophila
Brite
KEGG Orthology (KO) [BR:
dps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dps03016
]
DP1688
Enzymes [BR:
dps01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DP1688
Transfer RNA biogenesis [BR:
dps03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DP1688
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GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
Phage_int_SAM_6
Motif
Other DBs
NCBI-ProteinID:
CAG36417
UniProt:
Q6AMK8
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Position
complement(1888545..1890317)
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AA seq
590 aa
AA seq
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MEEVNLEELWELTTDEPTSVFSPAFLAELAFGKEVDDDLICSFLRCIFTDKLFFKYKEGR
VRINNAEQIAQLRMQQVAEEKKARLVKDGSQLLRSLYDLQNVEELENEYGSFFTESLDII
RDFYLFGSDFKQAATAKLLLKEASLNHPHAPFSLMEKSGRWSSHENIPLLRSEIPVAFSL
AARQQAEQILQTDMDKLFDDPARIDYTHLKPITIDGPTTQDFDDALTIEKDGENYLVGVH
ISDVAHYVRPGDPLFQEAMQRGTSIYFPEGQIPMLPRHLSQGICSLIQGEIRAALSFMIL
LSPEAEVLRVRIRPSIIKVARRLTYEEADSMLKDDNEIKMLNKVSQRLRQRRIDNGALLL
PFPDVNIFIDNQGKVHVQLAKSNTPARVLVSEMMILANSESARYVADRMVPGIYRSQPEL
KNRIVHGTDDDLFQNTKQRKQLPRGELSTVAKSHSGLGVSQYTTITSPIRRLLDLVMQHQ
LHSIVRRQEPRFTEDMCSDFTAVMSRTLSRANNVRHQRHRYWLLCYLEERKGQYLEALVI
QAGPKRTNLLLTDILLDVELPATGGISPGQRVKIRVAKADALDNVLRFEW
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggtcaaccttgaagagctctgggagcttaccaccgacgagcccacctccgta
ttttcacctgcctttctggcagaacttgcctttggcaaagaggtcgatgacgacctcatt
tgctcctttctacgttgtatttttaccgacaagctcttctttaaatacaaagagggtaga
gttcgaatcaacaacgctgaacagattgcacagcttcgtatgcagcaggttgcagaggaa
aagaaggctcgtctggtaaaggacggtagccaactcctgcgtagcctctacgacttgcaa
aacgttgaagaattggaaaatgaatacggcagtttctttaccgaatcactcgacattatt
cgagatttctacctgtttggtagcgattttaaacaggcggcaacggcaaagctactgctc
aaggaggcctcattaaaccatccccatgcccccttttctcttatggagaagtctggtcgt
tggagttcccacgagaacatcccacttctacgcagtgagattccggtagccttctctctg
gcggcacgacaacaggccgaacagatcctccagacagatatggacaagctctttgatgat
cccgcccgtattgactatacccacctcaagccaatcaccattgatggccccaccacccag
gattttgacgatgccctgaccattgaaaaggatggggaaaattacctggtcggtgtacat
atttcagatgttgcccactatgttcgccctggagaccctctctttcaggaggctatgcaa
cgcggcacatccatctattttcccgagggacagatccccatgttaccccgccatctctcc
caaggaatatgcagtcttattcaaggtgagatcagggcagcactcagctttatgatcctg
ctctcccccgaggccgaagtgcttcgggttcgcatccgcccctctattatcaaagtggcc
cgtcgcctcacctatgaggaggccgacagcatgctaaaagatgataacgaaatcaagatg
ctcaacaaggttagccagaggctacgccagaggcgtattgataatggcgcactccttctc
ccctttcccgatgtaaatatcttcattgacaatcagggcaaggttcatgttcaactagca
aaaagtaataccccggcccgggtccttgtctcagagatgatgattcttgccaatagcgaa
agtgccagatatgtcgcagaccgtatggttcccggtatctacagatcacagccagagctt
aaaaaccgtatcgttcatggcacagacgatgatctcttccagaacaccaaacaacgcaaa
cagttgccccgcggagaactctccaccgtggcaaaatcccatagcggtctgggtgtcagt
caatacaccaccatcacctcacccatcagaagattactcgacttggtaatgcaacaccaa
ctgcactccattgttcgcagacaggaaccacgttttactgaagatatgtgttctgatttc
acagcggtaatgtcaagaacactatcgcgggctaataatgtccgccaccaacgccatcgt
tactggcttctttgttatcttgaagaacgcaagggccaatacctggaggccctggtcatc
caggccggccccaagagaactaacctgctcttaaccgacatccttcttgatgtcgaactc
cctgccacgggcggaataagccccggacagagagtgaagatacgagtggcaaaggctgat
gccctagacaatgtccttcgctttgagtggtga
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