Desulfotalea psychrophila: DP1690
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Entry
DP1690 CDS
T00192
Name
(GenBank) probable ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dps
Desulfotalea psychrophila
Pathway
dps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DP1690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dps03019
]
DP1690
03009 Ribosome biogenesis [BR:
dps03009
]
DP1690
Enzymes [BR:
dps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DP1690
Messenger RNA biogenesis [BR:
dps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DP1690
Ribosome biogenesis [BR:
dps03009
]
Prokaryotic type
rRNA helicases
DP1690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
CMS1
ResIII
Utp25_C
Amelogenin
Bflower
Motif
Other DBs
NCBI-ProteinID:
CAG36419
UniProt:
Q6AMK6
LinkDB
All DBs
Position
1892197..1894095
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AA seq
632 aa
AA seq
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MTTVSTDVTGSTDTASSIDAAVPSAPVAPAAPVAPAAPVAPVAPVAPVAPVAPAVSFTDF
NLKSDLVANLVKLGFSQPTPIQEKAIPLLLAGSDLIGQAQTGTGKTAAFGLPLLNNIDFS
KKCVQALVLAPTRELAQQVGDALATYSGDDGRNVLVVYGGSSYQAQVGGLRRGARVVVGT
PGRLLDLIRQGSLKLDQLKTLVLDEADEMLSMGFIDDIETILSQTPKDRQTMLFSATLSS
RVMSIANRYLHSPESISISPKQMIGSSIEQRYYLINNSDKIAAITRVFEVETVESALIFA
RTRATVSELANELISRGFAAEGLSGDLSQEARTRVLSRFKKGQIKVLVATDVAARGLDID
DISHVFNYDLPEDPEVYVHRIGRTGRAGRSGTAISLVTLRDRWMHRRIEQYTGKKLIKGE
LPTVEQIEEHRNTQFLERLDVWIRRGRCRGEREIVEALVEQGMDPLDVAAAALKIVRKDE
TKRPIDPIKPVIEDAGGRNRKRGDRNDRGANGRGDRGGRSDSRGGRPQGRRDDRFAKGGD
RGPKKKGDDVRQVSDKDMVPLTLDAGKKDGVAVNHIVASLSHFAGISSRELGKIRINETH
SSIDVPKGLVDKMLSHNGSYRISKKAVNLTHQ
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgacaacagtttcaacagatgtaacaggttcaacagacacagcaagttcaatagatgca
gcagttccatcagctccagtagctccagcagctccagtagctccagcagctccagtagct
ccagtagctccagtagctccagtagctccagtagctccagcagtttcttttactgatttt
aatttaaaatcagaccttgtagcaaatcttgtaaaacttggctttagccaacctacacct
atccaagagaaggccattcctctccttctagcaggttctgatctgataggtcaggctcaa
accggaacaggtaagaccgcagcttttggtttaccacttctaaataatattgatttttct
aaaaaatgtgtgcaggcccttgttcttgctccaacccgtgagcttgcccagcaagtaggt
gatgctcttgccacttatagtggtgacgatggtcgcaatgttctggttgtgtatggtggt
tcgtcttatcaagctcaggtaggtggacttcgcaggggtgcgcgtgttgttgttggtact
cctggacgattgcttgacttaatccgtcagggatctctgaagcttgatcagctgaagacc
cttgttcttgatgaagcggatgagatgctcagtatgggctttattgatgatattgaaaca
attttgtcacaaacaccgaaagatcgtcaaacaatgcttttttctgcgaccctttcttct
cgtgtaatgagtattgccaatcgttatcttcattcgcctgagtctatctctatcagtccg
aagcagatgatcggctcttccattgagcaacgttactatcttattaataatagtgataaa
attgctgcaataacaagagtatttgaagtagagactgttgaaagcgccctcatctttgcc
agaactcgtgcaacggttagtgagcttgcaaacgagcttatttcccgtggatttgctgca
gaaggtcttagtggcgatttgagccaagaggctagaacacgagttttgagtcgttttaag
aagggtcagatcaaggtacttgtggcaacagatgttgcggctcgtggtcttgatattgac
gatatttctcatgttttcaattatgatctgccagaagatcctgaggtttatgttcatcgt
attggtcgtaccggtcgtgctggtcgtagtggaaccgctatctcactggtaactcttcgt
gatcgttggatgcatcgccgtatagagcaatatactggtaaaaaattgatcaagggcgag
cttcccaccgttgagcagattgaagagcatcgcaacactcaatttttagagcgtcttgat
gtatggatccgtcgtggtcgttgtcgtggtgagagagagattgtagaggctcttgttgag
cagggaatggatcctcttgatgttgctgctgctgccttgaaaattgttcgtaaggatgag
accaagcgtccaattgatccgatcaaacctgttattgaagatgcaggcggaagaaatcgc
aagcgcggtgacagaaatgatcgtggtgctaatggtcgaggtgatagaggcggtcgatct
gatagccgtggtggacgtccacagggccgtcgcgatgatcgttttgctaagggtggtgat
agaggcccaaagaaaaaaggcgatgatgtccgacaggttagcgacaaagatatggtgcct
cttacccttgatgctggtaaaaaagacggtgttgcggtaaatcatattgtggcctccttg
tctcattttgcaggaatttcttctcgggaacttggaaaaattcgtattaatgaaacccat
agtagtatcgacgtgccaaagggtttggttgataaaatgctctcccataacggtagctac
cgcatctccaaaaaagcggtaaatcttacccaccaatag
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