Entry |
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Name |
(GenBank) related to ATP-dependent helicase HrpA
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KO |
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Organism |
dps Desulfotalea psychrophila
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Brite |
KEGG Orthology (KO) [BR:dps00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:dps03019]
DP2207
Enzymes [BR:dps01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DP2207
Messenger RNA biogenesis [BR:dps03019]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DP2207
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
2536534..2540307
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AA seq |
1257 aa
MYHIFFPTSIITMSKLLTILPIDKHKDEIITAIKENQVIVIAGDTGSGKTTRLPQYCLEV
AQEGKLVGCTQPRRLAAVSVAARVGEEVGRSEEVGYKIRFHDYTTAKTKIKFMTDGVLLA
ETKSDRDLRKYSILIVDEAHERNLNIDFLLGYLKRLLPRRPDLKLIITSATIDTASFAKH
FNNAPLISIEGRTFPIDLRYAPIADEDEDYLEHCTGVVSQLFLRERPADTLIFLPTEKDI
RNCCEMLAKHIPNVEILPLFGRLQGSDQRRIFQPCPQGKIAKIVVATNVAETSITVPGIR
YVIDSGLARMTYYSVRSKTTSLPIQKISRASCDQRKGRCGRVSSGTCIRLFAEEDYLGRD
EFTLPEIKRSNLAEVLLQMSSLKLGDPNKFPFVDPPATSTIRDGYALLQELGAIKGYELT
LRGKIMADLPIDPCISRILIEASSNSCLRETMIIAAALSVQDPRIRPAEKEKEADQVHQR
FAHKHSDFMALLNIWNSFHEEEEKKSWSRLKKFCKSNFLSFQRMREWLDLHEQLCRIVKR
YKEFSFNENDGSYEQIHRSILAGFLRNIALKKEKKIYMGAGNRELMVFPGSHLFQSAGQW
IMAAGFLDTNRLYALTVATIEVDWIEPLAKSLCRYSWANPRWEKKTGQVIADEKVTLFGL
VLLASRRVNFGKRDKKNRAEARRIFIESALLSGDLWGKYPFLKNNLTLVSQWQETEERLR
KRDIVYSDTALHQFYQDRLGEDVYDRTSLEKFLKQTEDKKALFMTEQDILRRTPETSEYA
DFPTTIQIGSLSLKLSYTFDPRGNRDGLTVHIPVDLADTISPGRFDWLVPGFLKEKITFL
LKGLPKSLRKKLVPINSSVDRIMDDISTKAQSPSGNMLSCLESSILKLYRFNLQRSDWPQ
ELPHHLTPYFVLEADSGKEVCSGNNLKQMLTGTPNKGAISQEQFSLKKDAQIIVDKWKGW
EGDSWAFDQLPASIPLYNKQGSISGFLFTVLDPIEQRSKVQVNFTRNKQEALQRNQKGLS
YLYQLQFKGQLKPLRKSCSSALSAPSSLWLVKNYSDRKEASDHLLQFILQGIFDLSEATL
PGKESFAKVIGEVQKMGLLQRGNLICQDIAEIFRLRRETAELLEKVFLTRKNANKEKETF
SLLIEEILPKTFLQEKEIDLNSCRRQFRSLQVRLERFSANPVKDGQKNALLAPHLKNIEV
AEKTREKLSDEACQLLDQYKKMVQEFRISVFSPEIKTQMPVSDKKLLQHWQKTKSFI |
NT seq |
3774 nt +upstreamnt +downstreamnt
atgtaccatatattcttccccacatccattatcaccatgtcaaaacttctcaccatacta
ccgatagacaaacataaagacgaaattatcaccgcgatcaaagagaaccaagttatcgtt
atcgctggagatacaggatctggcaagacaacacgcctaccacagtactgtctcgaagta
gcccaggagggtaagttagtgggttgtacccaaccaagacgacttgccgctgtatccgtt
gccgcccgggtgggagaagaggttggacgaagtgaagaggtgggctataaaattcgtttt
cacgattacaccacagcaaaaacaaagataaagtttatgaccgatggtgtccttttggca
gagacaaaaagtgacagagatctccgtaaatactctatcctgatagtcgatgaggcccat
gaaagaaatctcaacattgatttcctccttggttacctgaagagactgttgccaagacga
ccggatctcaaattaattatcacctcggcaaccattgatacagcatcttttgccaagcat
tttaataacgccccgctcatctccatcgagggacgtactttccccatcgacctgcgctat
gcacctattgcagatgaggatgaagattaccttgaacactgcaccggggttgtaagccaa
ctttttttacgggaacgtccggcagataccctgatattcttaccaacggaaaaagatatc
cgcaactgctgcgagatgctggccaagcatatcccaaatgtagagatactgccccttttc
ggtcgcctgcagggaagtgaccaacggcgaattttccagccatgtcctcagggaaagatt
gctaaaattgtcgttgccaccaatgtggcagaaacatccatcacggtaccgggcatacgt
tatgtaatagacagtggtctggccagaatgacctattacagtgtccgttcaaaaacaacc
agccttcctattcaaaaaatttcccgggccagctgtgaccagagaaagggccgttgcggt
cgggtatcttccggtacctgcattagactctttgcagaggaagactatctgggacgtgat
gaatttaccctgcccgagattaaaagatccaatcttgccgaagtccttctgcagatgagc
agtctaaaattgggggatccaaataaatttccctttgttgatccgccggccaccagcact
attcgggatggctatgcccttctgcaagagctgggggcaatcaaggggtacgaactaacc
ctacgcgggaaaataatggcagatctacctattgatccctgtatttccagaatattaata
gaggccagcagcaacagctgtctgcgcgaaacaatgattattgccgcagccctcagtgtt
caggacccgcgaatcagaccggctgaaaaggagaaagaggcagaccaggttcatcaacgt
tttgcccataaacactcagactttatggccctgctcaatatctggaatagctttcatgaa
gaggaagagaaaaaatcgtggtcaaggctgaaaaaattctgcaaaagcaattttctctcc
tttcaaagaatgcgtgaatggcttgatctacatgaacagctgtgccgaatagttaaacgg
tacaaggagttctcttttaatgaaaatgacggctcatacgaacagatccacagatccatt
cttgccggatttcttcgtaatattgccctaaaaaaagagaagaagatctacatgggggca
ggaaacagagaactgatggtttttcccggttcccacctcttccaaagtgcaggacagtgg
attatggctgcaggattcctcgatactaaccgtctctacgccttaacggtggcaacaatt
gaggttgactggattgaacccctggcaaagtcactctgcaggtacagctgggcaaaccct
cgttgggagaaaaaaacaggacaggtcatagccgacgagaaggttaccctttttggcctt
gttctgcttgccagccgtagggtaaatttcggtaaaagagacaaaaagaacagagccgaa
gcccgacgtatctttatagaatctgctcttctcagtggtgatctttgggggaaatacccc
ttcctgaaaaacaatctcactctggttagccagtggcaggaaactgaagaacgattaaga
aaaagagacattgtctacagtgatactgccctccatcagttttatcaagatcgacttggc
gaagatgtctatgacagaacaagcctggaaaaatttttgaaacagacagaggacaaaaaa
gctctctttatgacagagcaggacatactacgccggaccccggagacaagtgaatatgca
gattttcccaccactatacagattggatccctctcgcttaagctcagttacacctttgat
ccccgcggcaaccgtgacggtttaacagttcatatacccgttgatcttgccgacacaatc
tcccctggacgttttgactggctcgttcccggatttttaaaagagaagatcaccttcctc
ttaaaaggcctgcccaagtctcttagaaaaaagctcgttcccataaatagttccgttgac
cgaatcatggatgatatcagcacaaaggcacagtcgccaagtggcaacatgctcagttgc
ttagagtcctctattctaaaactctatcgattcaacctacagcgctctgattggcctcag
gaactgccacatcatctcaccccctattttgtccttgaggctgattctggcaaggaggtt
tgctcgggaaataatttaaagcagatgcttaccgggacgccaaacaaaggtgccatcagt
caggagcagttttccttgaaaaaagatgcccagatcatagttgataagtggaagggttgg
gagggtgacagttgggccttcgaccagcttcccgcctctatccccctctataataagcag
ggaagtatttcaggatttttatttaccgtactggatcccatcgaacagaggtccaaagta
caggtgaatttcaccagaaataagcaggaggccctgcaaagaaatcagaaggggctgtca
tacctctatcaactgcagttcaaaggtcagcttaaacctctgagaaagtcctgttcaagt
gcactctctgccccatcttccctatggctagtaaaaaactatagcgatagaaaagaggca
agcgaccatctactgcaatttatccttcaggggatctttgatctctccgaggcaactctt
cctggcaaagagtcattcgccaaggtaataggtgaggttcagaaaatgggtctcttgcaa
agaggcaacctcatatgtcaagatattgcagagatttttcgcttgagacgagagacagct
gaattactggagaaggtctttttaacccggaaaaatgccaacaaagagaaggagacattc
tctctccttatcgaagagattctgccaaagacgtttttacaagaaaaagagatcgacctg
aactcctgccggagacagttcaggagtcttcaggtaagacttgaacgtttcagtgcaaac
cccgttaaagatgggcagaaaaatgccctcctcgcaccgcatttaaaaaatatagaggtg
gcggaaaagacacgggaaaaactgagcgatgaggcatgtcaacttctcgaccaatataaa
aaaatggttcaagaatttcgaatttctgtcttttcaccggaaataaaaacacagatgcct
gtttctgacaagaagctccttcagcactggcaaaaaaccaaatcatttatctaa |