Desulfotalea psychrophila: DP2207
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Entry
DP2207 CDS
T00192
Name
(GenBank) related to ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
dps
Desulfotalea psychrophila
Brite
KEGG Orthology (KO) [BR:
dps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dps03019
]
DP2207
Enzymes [BR:
dps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DP2207
Messenger RNA biogenesis [BR:
dps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DP2207
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
DEAD
AAA_19
nSTAND3
nSTAND_NTPase5
AAA_25
AAA_22
WHD_HA2
AAA_30
T2SSE
PhoH
SLFN-g3_helicase
ATPase
ABC_tran
AAA_23
Motif
Other DBs
NCBI-ProteinID:
CAG36936
UniProt:
Q6AL39
LinkDB
All DBs
Position
2536534..2540307
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AA seq
1257 aa
AA seq
DB search
MYHIFFPTSIITMSKLLTILPIDKHKDEIITAIKENQVIVIAGDTGSGKTTRLPQYCLEV
AQEGKLVGCTQPRRLAAVSVAARVGEEVGRSEEVGYKIRFHDYTTAKTKIKFMTDGVLLA
ETKSDRDLRKYSILIVDEAHERNLNIDFLLGYLKRLLPRRPDLKLIITSATIDTASFAKH
FNNAPLISIEGRTFPIDLRYAPIADEDEDYLEHCTGVVSQLFLRERPADTLIFLPTEKDI
RNCCEMLAKHIPNVEILPLFGRLQGSDQRRIFQPCPQGKIAKIVVATNVAETSITVPGIR
YVIDSGLARMTYYSVRSKTTSLPIQKISRASCDQRKGRCGRVSSGTCIRLFAEEDYLGRD
EFTLPEIKRSNLAEVLLQMSSLKLGDPNKFPFVDPPATSTIRDGYALLQELGAIKGYELT
LRGKIMADLPIDPCISRILIEASSNSCLRETMIIAAALSVQDPRIRPAEKEKEADQVHQR
FAHKHSDFMALLNIWNSFHEEEEKKSWSRLKKFCKSNFLSFQRMREWLDLHEQLCRIVKR
YKEFSFNENDGSYEQIHRSILAGFLRNIALKKEKKIYMGAGNRELMVFPGSHLFQSAGQW
IMAAGFLDTNRLYALTVATIEVDWIEPLAKSLCRYSWANPRWEKKTGQVIADEKVTLFGL
VLLASRRVNFGKRDKKNRAEARRIFIESALLSGDLWGKYPFLKNNLTLVSQWQETEERLR
KRDIVYSDTALHQFYQDRLGEDVYDRTSLEKFLKQTEDKKALFMTEQDILRRTPETSEYA
DFPTTIQIGSLSLKLSYTFDPRGNRDGLTVHIPVDLADTISPGRFDWLVPGFLKEKITFL
LKGLPKSLRKKLVPINSSVDRIMDDISTKAQSPSGNMLSCLESSILKLYRFNLQRSDWPQ
ELPHHLTPYFVLEADSGKEVCSGNNLKQMLTGTPNKGAISQEQFSLKKDAQIIVDKWKGW
EGDSWAFDQLPASIPLYNKQGSISGFLFTVLDPIEQRSKVQVNFTRNKQEALQRNQKGLS
YLYQLQFKGQLKPLRKSCSSALSAPSSLWLVKNYSDRKEASDHLLQFILQGIFDLSEATL
PGKESFAKVIGEVQKMGLLQRGNLICQDIAEIFRLRRETAELLEKVFLTRKNANKEKETF
SLLIEEILPKTFLQEKEIDLNSCRRQFRSLQVRLERFSANPVKDGQKNALLAPHLKNIEV
AEKTREKLSDEACQLLDQYKKMVQEFRISVFSPEIKTQMPVSDKKLLQHWQKTKSFI
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atgtaccatatattcttccccacatccattatcaccatgtcaaaacttctcaccatacta
ccgatagacaaacataaagacgaaattatcaccgcgatcaaagagaaccaagttatcgtt
atcgctggagatacaggatctggcaagacaacacgcctaccacagtactgtctcgaagta
gcccaggagggtaagttagtgggttgtacccaaccaagacgacttgccgctgtatccgtt
gccgcccgggtgggagaagaggttggacgaagtgaagaggtgggctataaaattcgtttt
cacgattacaccacagcaaaaacaaagataaagtttatgaccgatggtgtccttttggca
gagacaaaaagtgacagagatctccgtaaatactctatcctgatagtcgatgaggcccat
gaaagaaatctcaacattgatttcctccttggttacctgaagagactgttgccaagacga
ccggatctcaaattaattatcacctcggcaaccattgatacagcatcttttgccaagcat
tttaataacgccccgctcatctccatcgagggacgtactttccccatcgacctgcgctat
gcacctattgcagatgaggatgaagattaccttgaacactgcaccggggttgtaagccaa
ctttttttacgggaacgtccggcagataccctgatattcttaccaacggaaaaagatatc
cgcaactgctgcgagatgctggccaagcatatcccaaatgtagagatactgccccttttc
ggtcgcctgcagggaagtgaccaacggcgaattttccagccatgtcctcagggaaagatt
gctaaaattgtcgttgccaccaatgtggcagaaacatccatcacggtaccgggcatacgt
tatgtaatagacagtggtctggccagaatgacctattacagtgtccgttcaaaaacaacc
agccttcctattcaaaaaatttcccgggccagctgtgaccagagaaagggccgttgcggt
cgggtatcttccggtacctgcattagactctttgcagaggaagactatctgggacgtgat
gaatttaccctgcccgagattaaaagatccaatcttgccgaagtccttctgcagatgagc
agtctaaaattgggggatccaaataaatttccctttgttgatccgccggccaccagcact
attcgggatggctatgcccttctgcaagagctgggggcaatcaaggggtacgaactaacc
ctacgcgggaaaataatggcagatctacctattgatccctgtatttccagaatattaata
gaggccagcagcaacagctgtctgcgcgaaacaatgattattgccgcagccctcagtgtt
caggacccgcgaatcagaccggctgaaaaggagaaagaggcagaccaggttcatcaacgt
tttgcccataaacactcagactttatggccctgctcaatatctggaatagctttcatgaa
gaggaagagaaaaaatcgtggtcaaggctgaaaaaattctgcaaaagcaattttctctcc
tttcaaagaatgcgtgaatggcttgatctacatgaacagctgtgccgaatagttaaacgg
tacaaggagttctcttttaatgaaaatgacggctcatacgaacagatccacagatccatt
cttgccggatttcttcgtaatattgccctaaaaaaagagaagaagatctacatgggggca
ggaaacagagaactgatggtttttcccggttcccacctcttccaaagtgcaggacagtgg
attatggctgcaggattcctcgatactaaccgtctctacgccttaacggtggcaacaatt
gaggttgactggattgaacccctggcaaagtcactctgcaggtacagctgggcaaaccct
cgttgggagaaaaaaacaggacaggtcatagccgacgagaaggttaccctttttggcctt
gttctgcttgccagccgtagggtaaatttcggtaaaagagacaaaaagaacagagccgaa
gcccgacgtatctttatagaatctgctcttctcagtggtgatctttgggggaaatacccc
ttcctgaaaaacaatctcactctggttagccagtggcaggaaactgaagaacgattaaga
aaaagagacattgtctacagtgatactgccctccatcagttttatcaagatcgacttggc
gaagatgtctatgacagaacaagcctggaaaaatttttgaaacagacagaggacaaaaaa
gctctctttatgacagagcaggacatactacgccggaccccggagacaagtgaatatgca
gattttcccaccactatacagattggatccctctcgcttaagctcagttacacctttgat
ccccgcggcaaccgtgacggtttaacagttcatatacccgttgatcttgccgacacaatc
tcccctggacgttttgactggctcgttcccggatttttaaaagagaagatcaccttcctc
ttaaaaggcctgcccaagtctcttagaaaaaagctcgttcccataaatagttccgttgac
cgaatcatggatgatatcagcacaaaggcacagtcgccaagtggcaacatgctcagttgc
ttagagtcctctattctaaaactctatcgattcaacctacagcgctctgattggcctcag
gaactgccacatcatctcaccccctattttgtccttgaggctgattctggcaaggaggtt
tgctcgggaaataatttaaagcagatgcttaccgggacgccaaacaaaggtgccatcagt
caggagcagttttccttgaaaaaagatgcccagatcatagttgataagtggaagggttgg
gagggtgacagttgggccttcgaccagcttcccgcctctatccccctctataataagcag
ggaagtatttcaggatttttatttaccgtactggatcccatcgaacagaggtccaaagta
caggtgaatttcaccagaaataagcaggaggccctgcaaagaaatcagaaggggctgtca
tacctctatcaactgcagttcaaaggtcagcttaaacctctgagaaagtcctgttcaagt
gcactctctgccccatcttccctatggctagtaaaaaactatagcgatagaaaagaggca
agcgaccatctactgcaatttatccttcaggggatctttgatctctccgaggcaactctt
cctggcaaagagtcattcgccaaggtaataggtgaggttcagaaaatgggtctcttgcaa
agaggcaacctcatatgtcaagatattgcagagatttttcgcttgagacgagagacagct
gaattactggagaaggtctttttaacccggaaaaatgccaacaaagagaaggagacattc
tctctccttatcgaagagattctgccaaagacgtttttacaagaaaaagagatcgacctg
aactcctgccggagacagttcaggagtcttcaggtaagacttgaacgtttcagtgcaaac
cccgttaaagatgggcagaaaaatgccctcctcgcaccgcatttaaaaaatatagaggtg
gcggaaaagacacgggaaaaactgagcgatgaggcatgtcaacttctcgaccaatataaa
aaaatggttcaagaatttcgaatttctgtcttttcaccggaaataaaaacacagatgcct
gtttctgacaagaagctccttcagcactggcaaaaaaccaaatcatttatctaa
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