KEGG   Desulfotalea psychrophila: DP2207
Entry
DP2207            CDS       T00192                                 
Name
(GenBank) related to ATP-dependent helicase HrpA
  KO
K03578  ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
Organism
dps  Desulfotalea psychrophila
Brite
KEGG Orthology (KO) [BR:dps00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dps03019]
    DP2207
Enzymes [BR:dps01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     DP2207
Messenger RNA biogenesis [BR:dps03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Others
     DP2207
SSDB
Motif
Pfam: DUF3418 Helicase_C OB_NTP_bind HA2_C DEAD AAA_19 nSTAND3 AAA_25 AAA_22 AAA_30 HA2_N T2SSE PhoH SLFN-g3_helicase BBS7_hp ATPase ABC_tran AAA_23
Other DBs
NCBI-ProteinID: CAG36936
UniProt: Q6AL39
LinkDB
Position
2536534..2540307
AA seq 1257 aa
MYHIFFPTSIITMSKLLTILPIDKHKDEIITAIKENQVIVIAGDTGSGKTTRLPQYCLEV
AQEGKLVGCTQPRRLAAVSVAARVGEEVGRSEEVGYKIRFHDYTTAKTKIKFMTDGVLLA
ETKSDRDLRKYSILIVDEAHERNLNIDFLLGYLKRLLPRRPDLKLIITSATIDTASFAKH
FNNAPLISIEGRTFPIDLRYAPIADEDEDYLEHCTGVVSQLFLRERPADTLIFLPTEKDI
RNCCEMLAKHIPNVEILPLFGRLQGSDQRRIFQPCPQGKIAKIVVATNVAETSITVPGIR
YVIDSGLARMTYYSVRSKTTSLPIQKISRASCDQRKGRCGRVSSGTCIRLFAEEDYLGRD
EFTLPEIKRSNLAEVLLQMSSLKLGDPNKFPFVDPPATSTIRDGYALLQELGAIKGYELT
LRGKIMADLPIDPCISRILIEASSNSCLRETMIIAAALSVQDPRIRPAEKEKEADQVHQR
FAHKHSDFMALLNIWNSFHEEEEKKSWSRLKKFCKSNFLSFQRMREWLDLHEQLCRIVKR
YKEFSFNENDGSYEQIHRSILAGFLRNIALKKEKKIYMGAGNRELMVFPGSHLFQSAGQW
IMAAGFLDTNRLYALTVATIEVDWIEPLAKSLCRYSWANPRWEKKTGQVIADEKVTLFGL
VLLASRRVNFGKRDKKNRAEARRIFIESALLSGDLWGKYPFLKNNLTLVSQWQETEERLR
KRDIVYSDTALHQFYQDRLGEDVYDRTSLEKFLKQTEDKKALFMTEQDILRRTPETSEYA
DFPTTIQIGSLSLKLSYTFDPRGNRDGLTVHIPVDLADTISPGRFDWLVPGFLKEKITFL
LKGLPKSLRKKLVPINSSVDRIMDDISTKAQSPSGNMLSCLESSILKLYRFNLQRSDWPQ
ELPHHLTPYFVLEADSGKEVCSGNNLKQMLTGTPNKGAISQEQFSLKKDAQIIVDKWKGW
EGDSWAFDQLPASIPLYNKQGSISGFLFTVLDPIEQRSKVQVNFTRNKQEALQRNQKGLS
YLYQLQFKGQLKPLRKSCSSALSAPSSLWLVKNYSDRKEASDHLLQFILQGIFDLSEATL
PGKESFAKVIGEVQKMGLLQRGNLICQDIAEIFRLRRETAELLEKVFLTRKNANKEKETF
SLLIEEILPKTFLQEKEIDLNSCRRQFRSLQVRLERFSANPVKDGQKNALLAPHLKNIEV
AEKTREKLSDEACQLLDQYKKMVQEFRISVFSPEIKTQMPVSDKKLLQHWQKTKSFI
NT seq 3774 nt   +upstreamnt  +downstreamnt
atgtaccatatattcttccccacatccattatcaccatgtcaaaacttctcaccatacta
ccgatagacaaacataaagacgaaattatcaccgcgatcaaagagaaccaagttatcgtt
atcgctggagatacaggatctggcaagacaacacgcctaccacagtactgtctcgaagta
gcccaggagggtaagttagtgggttgtacccaaccaagacgacttgccgctgtatccgtt
gccgcccgggtgggagaagaggttggacgaagtgaagaggtgggctataaaattcgtttt
cacgattacaccacagcaaaaacaaagataaagtttatgaccgatggtgtccttttggca
gagacaaaaagtgacagagatctccgtaaatactctatcctgatagtcgatgaggcccat
gaaagaaatctcaacattgatttcctccttggttacctgaagagactgttgccaagacga
ccggatctcaaattaattatcacctcggcaaccattgatacagcatcttttgccaagcat
tttaataacgccccgctcatctccatcgagggacgtactttccccatcgacctgcgctat
gcacctattgcagatgaggatgaagattaccttgaacactgcaccggggttgtaagccaa
ctttttttacgggaacgtccggcagataccctgatattcttaccaacggaaaaagatatc
cgcaactgctgcgagatgctggccaagcatatcccaaatgtagagatactgccccttttc
ggtcgcctgcagggaagtgaccaacggcgaattttccagccatgtcctcagggaaagatt
gctaaaattgtcgttgccaccaatgtggcagaaacatccatcacggtaccgggcatacgt
tatgtaatagacagtggtctggccagaatgacctattacagtgtccgttcaaaaacaacc
agccttcctattcaaaaaatttcccgggccagctgtgaccagagaaagggccgttgcggt
cgggtatcttccggtacctgcattagactctttgcagaggaagactatctgggacgtgat
gaatttaccctgcccgagattaaaagatccaatcttgccgaagtccttctgcagatgagc
agtctaaaattgggggatccaaataaatttccctttgttgatccgccggccaccagcact
attcgggatggctatgcccttctgcaagagctgggggcaatcaaggggtacgaactaacc
ctacgcgggaaaataatggcagatctacctattgatccctgtatttccagaatattaata
gaggccagcagcaacagctgtctgcgcgaaacaatgattattgccgcagccctcagtgtt
caggacccgcgaatcagaccggctgaaaaggagaaagaggcagaccaggttcatcaacgt
tttgcccataaacactcagactttatggccctgctcaatatctggaatagctttcatgaa
gaggaagagaaaaaatcgtggtcaaggctgaaaaaattctgcaaaagcaattttctctcc
tttcaaagaatgcgtgaatggcttgatctacatgaacagctgtgccgaatagttaaacgg
tacaaggagttctcttttaatgaaaatgacggctcatacgaacagatccacagatccatt
cttgccggatttcttcgtaatattgccctaaaaaaagagaagaagatctacatgggggca
ggaaacagagaactgatggtttttcccggttcccacctcttccaaagtgcaggacagtgg
attatggctgcaggattcctcgatactaaccgtctctacgccttaacggtggcaacaatt
gaggttgactggattgaacccctggcaaagtcactctgcaggtacagctgggcaaaccct
cgttgggagaaaaaaacaggacaggtcatagccgacgagaaggttaccctttttggcctt
gttctgcttgccagccgtagggtaaatttcggtaaaagagacaaaaagaacagagccgaa
gcccgacgtatctttatagaatctgctcttctcagtggtgatctttgggggaaatacccc
ttcctgaaaaacaatctcactctggttagccagtggcaggaaactgaagaacgattaaga
aaaagagacattgtctacagtgatactgccctccatcagttttatcaagatcgacttggc
gaagatgtctatgacagaacaagcctggaaaaatttttgaaacagacagaggacaaaaaa
gctctctttatgacagagcaggacatactacgccggaccccggagacaagtgaatatgca
gattttcccaccactatacagattggatccctctcgcttaagctcagttacacctttgat
ccccgcggcaaccgtgacggtttaacagttcatatacccgttgatcttgccgacacaatc
tcccctggacgttttgactggctcgttcccggatttttaaaagagaagatcaccttcctc
ttaaaaggcctgcccaagtctcttagaaaaaagctcgttcccataaatagttccgttgac
cgaatcatggatgatatcagcacaaaggcacagtcgccaagtggcaacatgctcagttgc
ttagagtcctctattctaaaactctatcgattcaacctacagcgctctgattggcctcag
gaactgccacatcatctcaccccctattttgtccttgaggctgattctggcaaggaggtt
tgctcgggaaataatttaaagcagatgcttaccgggacgccaaacaaaggtgccatcagt
caggagcagttttccttgaaaaaagatgcccagatcatagttgataagtggaagggttgg
gagggtgacagttgggccttcgaccagcttcccgcctctatccccctctataataagcag
ggaagtatttcaggatttttatttaccgtactggatcccatcgaacagaggtccaaagta
caggtgaatttcaccagaaataagcaggaggccctgcaaagaaatcagaaggggctgtca
tacctctatcaactgcagttcaaaggtcagcttaaacctctgagaaagtcctgttcaagt
gcactctctgccccatcttccctatggctagtaaaaaactatagcgatagaaaagaggca
agcgaccatctactgcaatttatccttcaggggatctttgatctctccgaggcaactctt
cctggcaaagagtcattcgccaaggtaataggtgaggttcagaaaatgggtctcttgcaa
agaggcaacctcatatgtcaagatattgcagagatttttcgcttgagacgagagacagct
gaattactggagaaggtctttttaacccggaaaaatgccaacaaagagaaggagacattc
tctctccttatcgaagagattctgccaaagacgtttttacaagaaaaagagatcgacctg
aactcctgccggagacagttcaggagtcttcaggtaagacttgaacgtttcagtgcaaac
cccgttaaagatgggcagaaaaatgccctcctcgcaccgcatttaaaaaatatagaggtg
gcggaaaagacacgggaaaaactgagcgatgaggcatgtcaacttctcgaccaatataaa
aaaatggttcaagaatttcgaatttctgtcttttcaccggaaataaaaacacagatgcct
gtttctgacaagaagctccttcagcactggcaaaaaaccaaatcatttatctaa

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