Desulfotalea psychrophila: DP2728
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Entry
DP2728 CDS
T00192
Name
(GenBank) probable transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dps
Desulfotalea psychrophila
Pathway
dps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DP2728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dps03021
]
DP2728
03019 Messenger RNA biogenesis [BR:
dps03019
]
DP2728
Transcription machinery [BR:
dps03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
DP2728
Messenger RNA biogenesis [BR:
dps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DP2728
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Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
NACHT
AAA
OB_RNB
ATPase_2
AAA_25
S1CSD-TOTE-2
AF_0155
Mor
Motif
Other DBs
NCBI-ProteinID:
CAG37457
UniProt:
Q6AJM3
LinkDB
All DBs
Position
complement(3089859..3091109)
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AA seq
416 aa
AA seq
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MNLAELKLKKIGDLVQLARQLNVEGYSILRKQELIFAILQAQADKEGKMRGSGVLEILPD
GFGFLRAPDYNYLPGPDDIYVSPSQIRRLNLRTGDTIDGMVRAPKEGERYFALLKVESVN
FDSPEAAKQKTLFGNLTPLHPDEAFDLDCDSDNYSIRAMDLFAPIGKGQRGLLVAPPRTG
KTVFMQKLANTIVRNHPEVYLIVLLIDERPEEVTEMSRSVKAAEVVSSTFDEPPQRHIQV
AEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKILSGGVEANALHRPKRFFG
AARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNMELVLDRKMADKRIFPAIDIRR
SGTRKEELLMKPDKLNRIWILRKILNAMNPSDCMDFLMDKLKHHKTNAEFIDNMNG
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgaatctggcggaattaaagctgaaaaaaattggagacctggtacaacttgcgcgccaa
ttgaatgttgagggttatagcatattgcgtaagcaggagctgatctttgcaattctgcag
gcccaggctgataaagaaggcaagatgcgtggaagcggagttctggagattcttccagat
ggctttggctttctccgggctcctgattataattacttgccaggtccagatgatatctat
gtgtctccatcgcaaattcgcaggttgaatttgagaacaggtgataccattgacggtatg
gtgcgtgcccctaaggaaggcgagagatattttgcccttttgaaagtcgagagtgtcaac
tttgattctcccgaggcagctaaacagaagactctgtttggtaatctcacccctcttcat
cccgacgaggcctttgatctagactgcgattcagataattattccatacgggcaatggat
ctgtttgcccctattggtaagggacaacgtggcctgcttgtagctcctccccgtactggt
aaaactgtttttatgcagaaacttgccaatacaattgtacgcaatcatccagaggtgtac
ctgatagtactgcttattgatgagcgtccggaagaggttaccgagatgtcccgttcggtt
aaggctgcagaggttgtcagttctacctttgatgaaccaccacagcgacatattcaagtt
gctgaaatggttattgagaaggccaagagattggtagagcataaaaaagatgttgttatt
ctgcttgatagtattacaagacttgcgcgggcatacaataccgttactcctgcaagtggt
aaaattctatccggtggtgttgaggctaacgccctgcatcgtccaaagagattttttggt
gctgctcgaaacatcgaagaaggtggcagtctcaccatcatagctacggcccttatcgag
accggaagccgcatggatgaggttatcttcgaagagttcaagggtacgggtaacatggag
ttggtacttgatcgtaagatggcagataagagaatttttcctgccattgatattcgacgt
tctggtactcgtaaagaagagctgttgatgaagccggataagctaaatcgtatctggatt
ctcaggaagattcttaatgccatgaatccctcagattgtatggattttcttatggataag
ttgaagcatcataagacaaatgcagaatttattgataatatgaacgggtaa
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