Dermatophagoides pteronyssinus (European house dust mite): 113789973
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Entry
113789973 CDS
T05775
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dpte
Dermatophagoides pteronyssinus (European house dust mite)
Pathway
dpte03013
Nucleocytoplasmic transport
dpte03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dpte00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113789973
03015 mRNA surveillance pathway
113789973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpte03019
]
113789973
Enzymes [BR:
dpte01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
113789973
5.6.2.5 RNA 5'-3' helicase
113789973
Messenger RNA biogenesis [BR:
dpte03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
113789973
mRNA cycle factors
Common to processing body (P body) and stress granule
113789973
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
NPHP3_N
nSTAND3
SLFN-g3_helicase
ATPase
Helicase_RecD
SRP54
DEAD
AAA_16
PhoH
AAA_22
Motif
Other DBs
NCBI-GeneID:
113789973
NCBI-ProteinID:
XP_027195378
UniProt:
A0A6P6XRF0
LinkDB
All DBs
Position
Unknown
AA seq
1177 aa
AA seq
DB search
MSQFLDERDNDDLMLLNTQCSNFDYGEYSQRLSNSQQPSSYNHHDVFGQDVAGGSSSNNS
VADPITSDITGITQNFSELNFEDEDDDNIIGGSGGVGDYNKELPGHACKYCGIHDPNTVV
QCNICKKWFCNGRGNTSGSHIINHLVRSKHKEVSLHKDGTLGDTVLECYSCGCRNVFVLG
FIPAKADSVVVLLCRQPCAAQSSLKDMNWDPDQWKPLISERMFLSWLVKVPSDEEQLRAR
QITAQQINKLEELWKEGSSEATFLDLEKPGVDEEPQQVLVSYEDAYQYQGIFSPLVKLEA
DYDKKLKESQTQDNIEVRWDVGLNMKIIAYFRIAKSDTDMRLMHGDELKLRYVGDPSKPW
SGIGHVTKIPDNYSDEVAIELKTNHNVPTNCNSNFAVDFVWKSTSFDRMQAALRRFTIDD
TSVNSSIYHKLLGHNLEDKQMSKSSNIKLNIPPNLPELNKSQMFAVKQSASKSLTLIQGP
PGTGKTVTSASIVYHFVRSGSTPVLVCAPSNIAVDQLTEKIHLTGLKVVRICAKSREAIS
SPVSFLALHNQIREMVGHSEFRKLQQLKDETGELSSSDEKRYRILKRQCERELLESADVI
CCTCVGAGDPRLCRFKFHSMLIDESMQATEPECMVPVVLGVRQLVLVGDHCQLGPVVMCK
KAAKAGLSRSLFERLVVLGIRPIRLEVQYRMHPSLSEFPSNLFYEGSLQNGVHGSERQLK
GNDFPWPIPDRPMFFYCCQGQEEIAGSGTSYLNRTEAAYVEKIITRFLKSGLKPEQLGVI
TPYEGQRSFLVQYMQHNGSFHTKLYQEIEVASVDAFQGREKDIIVFSCVRSNEHQGIGFL
NDPRRLNVALTRAKYGIIIVGNPKVLSKQPIWNHLLSFYKEQRVLVEGPLNNLKESLIQF
SKPRKMINPITNGLSPFNSVAQPMMNTNSSNNNQFQMPTLPFAMNNRFGHGLLSNPIGNP
NNNNDRDEYSNYSSSQTNSQPYSHHNVHHPQPPPSHHHHYRSNQHDQLSYIANDRAQTNL
AAISNFPVPIGLFITMPQNYYGQNQQQHQQMAHNQRSNNGKQQQNKRYNRNSGTVSRSSQ
DSQNLSQNLLTQPGTFGQLSSSNSQQQQHPGAGLYSMQGYSQHLLSQTDLSQDPYSFEDR
SQLDGLLSQESAYHDRSHLYLSSQTANPGGGGGTQPN
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaatttcttgatgaacgagacaatgatgatctaatgttgttgaatactcaatgt
agtaattttgattatggtgaatattcacaacgattatcaaattcacaacaaccttcatca
tataatcatcatgatgtttttggtcaagatgtagcaggtggctcatcatcaaacaatagt
gtagctgatccaattacatcggatataactggtataacacagaattttagtgaattaaat
ttcgaagatgaagatgatgataatattatcggtggtagtggtggtgttggtgattataat
aaagaattacctggacatgcttgtaaatattgtggtatacatgatccgaatactgttgta
caatgtaatatttgtaaaaaatggttctgtaatggtcgtggtaatacatcgggcagtcat
attattaatcatttagttcgatcgaaacataaagaagttagtctacataaagatggtaca
cttggtgatacagtgcttgaatgttatagctgtggttgtcgtaatgtatttgtattggga
tttataccagctaaagctgattcggttgttgtattgctttgtcgacaaccatgtgcagca
caatccagcctcaaggatatgaattgggatcctgatcaatggaaaccattgatttcagaa
cgaatgtttctttcatggttagtaaaagttccgtcggatgaagaacaacttcgtgctaga
caaattaccgctcaacagattaataaattggaagaactttggaaggaaggtagttcagag
gcaacatttttggatctagaaaaacctggtgtcgatgaagaaccacaacaagtattggtc
agttatgaagatgcatatcaatatcaaggtatattttcaccattggtcaaattggaagcc
gattatgataaaaaattgaaagaatcgcaaacacaagataatattgaagtaagatgggat
gttggtttgaatatgaaaattattgcctattttcgtattgctaaatctgatactgatatg
cgtttgatgcatggtgatgaacttaaacttcgttatgttggtgatccatccaaaccatgg
tccggtattggtcatgtaacaaaaatccccgataattatagtgatgaagttgcaatcgaa
ttgaaaacaaatcataatgtacctactaattgtaattcaaattttgctgttgattttgtt
tggaaatctactagttttgatagaatgcaagctgctttacgtcgatttaccattgatgat
acatcggttaatagtagtatctatcataaattacttggccataatttggaggataaacaa
atgtctaaatcatctaatatcaaattgaatataccaccgaatttgcctgaacttaataaa
tcacaaatgtttgctgttaaacaatcagcatcgaaaagtttaaccctgattcaaggacca
ccgggtactggtaaaacagttacatcggcatcgattgtttatcattttgtacgatcaggt
tcaacacctgttttggtttgtgcaccaagtaatattgctgtcgatcaattaacggaaaaa
attcatctgaccggattgaaagtagtgcggatatgtgcaaaaagtcgtgaagcaattagt
tcacctgtatcatttcttgcattacataatcaaattcgtgaaatggttggacattcagaa
tttcgtaaattacaacaattaaaagatgaaaccggagagctgtcatcatccgatgaaaaa
cgttatcgaatattgaaacgacaatgtgaacgtgaattattagaatcggctgatgttatt
tgttgtacatgtgttggtgctggtgatccacgattatgtcgatttaaatttcattcgatg
cttattgatgaatcgatgcaagcaactgaacctgaatgtatggtaccagtagttcttggc
gtacgacaattagtacttgttggtgatcattgtcaacttggtccagtggttatgtgtaaa
aaagcagctaaagctggtctttctcgatcactattcgaacgtttagttgtacttggtata
cgtcctattcgtttggaagttcaatatcgtatgcatccatcgttaagtgaatttccatcg
aatttattctatgaaggatcattacaaaatggtgttcatggatccgaaaggcaattgaaa
ggaaatgattttccatggccaataccagatcgaccaatgtttttttattgttgtcaagga
caagaagaaattgctggttctggtacatcgtatttgaatcgtacagaagctgcttatgtt
gaaaaaattattacaagatttttgaaatccggattgaaacccgaacaattgggtgtgatt
acaccgtatgaaggacaacgttcatttttggtacaatatatgcaacataatggatcattt
catacgaaattatatcaggaaattgaagtggccagtgttgatgcatttcaaggacgagaa
aaagatattatcgtattttcctgtgttcgttcgaatgaacatcaaggtattggatttttg
aatgatccacgacgattgaatgtagcattaactcgtgcaaaatatggaatcattattgtt
ggtaatccaaaagttttatccaaacaaccaatttggaatcatttactgtcattttataaa
gaacaacgtgtattggttgaaggaccattgaataatctaaaagaaagtttgatacaattt
tctaaaccacgtaaaatgattaatccgattacgaatggactttcaccatttaattcggtt
gcacaacctatgatgaacactaacagcagtaataataatcaatttcaaatgccaacatta
ccatttgcaatgaataatcgttttggacatggattattatcgaatccgatcggaaatccg
aacaataataatgatcgtgatgaatattcaaattattcatcaagtcaaacaaattcacaa
ccatatagtcatcataatgttcatcatccacaaccaccaccatcacatcatcatcattat
cgatctaatcaacatgatcaattatcctatattgctaatgatcgtgcacaaactaatttg
gctgccatatcaaattttccagtaccgattggtcttttcataacgatgccacaaaattat
tatggacaaaatcaacaacaacatcaacagatggctcataaccaaagatcgaataatggt
aaacaacaacaaaataaaagatataatcgtaatagtggtacggttagtcgaagtagtcag
gatagtcagaatttatcacaaaatttgcttacacaacctggtacatttggtcaattatct
tcatcgaatagtcaacaacaacaacatccaggtgctggtctttattcgatgcaaggatat
tcacaacatcttctttcacaaacagatctatcacaggatccatatagctttgaagataga
tctcaattggatggacttttatcacaagaatctgcttaccatgatcgaagtcatctatat
ctatcatcacaaacagccaatccaggtggtggtggtggaacacagcctaattaa
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integrated database retrieval system
